Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Trim56Q80VI1 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
Trim56Q80VI1 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Trim56Q80VI1 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Trim56Q80VI1 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Trim56Q80VI1 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Trim56Q80VI1 AC135963.1-201ENSMUST00000211640 717 ntBASIC20.7■□□□□ 0.9
Trim56Q80VI1 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Trim56Q80VI1 Pigu-201ENSMUST00000077626 1636 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Trim56Q80VI1 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Trim56Q80VI1 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trim56Q80VI1 Cyth2-201ENSMUST00000056820 2527 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trim56Q80VI1 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trim56Q80VI1 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC20.69■□□□□ 0.9
Trim56Q80VI1 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trim56Q80VI1 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trim56Q80VI1 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Trim56Q80VI1 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trim56Q80VI1 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trim56Q80VI1 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trim56Q80VI1 Best2-203ENSMUST00000209421 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trim56Q80VI1 Trim14-201ENSMUST00000046897 1429 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trim56Q80VI1 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Trim56Q80VI1 Dlgap2-209ENSMUST00000152652 3842 ntAPPRIS P4 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trim56Q80VI1 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC20.68■□□□□ 0.9
Trim56Q80VI1 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Trim56Q80VI1 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trim56Q80VI1 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trim56Q80VI1 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trim56Q80VI1 Scamp4-201ENSMUST00000079883 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trim56Q80VI1 Dlk2-202ENSMUST00000166280 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trim56Q80VI1 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC20.68■□□□□ 0.9
Trim56Q80VI1 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
Trim56Q80VI1 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
Trim56Q80VI1 Cmip-202ENSMUST00000166750 2408 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
Trim56Q80VI1 2810459M11Rik-202ENSMUST00000165824 3331 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trim56Q80VI1 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Trim56Q80VI1 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
Trim56Q80VI1 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC20.67■□□□□ 0.9
Trim56Q80VI1 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Trim56Q80VI1 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC20.67■□□□□ 0.9
Trim56Q80VI1 Tlk2-201ENSMUST00000015107 3212 ntAPPRIS P3 TSL 5 BASIC20.67■□□□□ 0.9
Trim56Q80VI1 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC20.67■□□□□ 0.9
Trim56Q80VI1 Panx2-203ENSMUST00000162424 3391 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim56Q80VI1 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim56Q80VI1 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim56Q80VI1 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim56Q80VI1 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Trim56Q80VI1 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC20.66■□□□□ 0.9
Trim56Q80VI1 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim56Q80VI1 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim56Q80VI1 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Trim56Q80VI1 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Trim56Q80VI1 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC20.66■□□□□ 0.9
Trim56Q80VI1 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim56Q80VI1 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim56Q80VI1 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Trim56Q80VI1 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim56Q80VI1 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim56Q80VI1 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
Trim56Q80VI1 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim56Q80VI1 Prps1l3-201ENSMUST00000139049 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim56Q80VI1 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Trim56Q80VI1 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC20.65■□□□□ 0.9
Trim56Q80VI1 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim56Q80VI1 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Trim56Q80VI1 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Trim56Q80VI1 Ndufa12-201ENSMUST00000020209 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim56Q80VI1 Gm30025-201ENSMUST00000218555 728 ntBASIC20.65■□□□□ 0.9
Trim56Q80VI1 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC20.65■□□□□ 0.9
Trim56Q80VI1 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
Trim56Q80VI1 Klhl25-201ENSMUST00000092073 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim56Q80VI1 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim56Q80VI1 Adam22-205ENSMUST00000115385 2318 ntTSL 2 BASIC20.65■□□□□ 0.9
Trim56Q80VI1 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC20.65■□□□□ 0.9
Trim56Q80VI1 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Trim56Q80VI1 Gm19721-201ENSMUST00000195284 1764 ntBASIC20.64■□□□□ 0.9
Trim56Q80VI1 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Trim56Q80VI1 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Trim56Q80VI1 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
Trim56Q80VI1 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC20.64■□□□□ 0.89
Trim56Q80VI1 Gm16105-201ENSMUST00000156926 697 ntTSL 3 BASIC20.64■□□□□ 0.89
Trim56Q80VI1 Krtap5-1-202ENSMUST00000188274 742 ntBASIC20.64■□□□□ 0.89
Trim56Q80VI1 Ift74-201ENSMUST00000030311 2139 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
Trim56Q80VI1 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
Trim56Q80VI1 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Trim56Q80VI1 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Trim56Q80VI1 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Trim56Q80VI1 Usp13-202ENSMUST00000108228 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trim56Q80VI1 Gm37811-201ENSMUST00000192416 2601 ntBASIC20.63■□□□□ 0.89
Trim56Q80VI1 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trim56Q80VI1 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trim56Q80VI1 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trim56Q80VI1 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
Trim56Q80VI1 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC20.63■□□□□ 0.89
Trim56Q80VI1 Gm11539-201ENSMUST00000119837 557 ntBASIC20.63■□□□□ 0.89
Trim56Q80VI1 Gm13436-201ENSMUST00000120418 567 ntBASIC20.63■□□□□ 0.89
Trim56Q80VI1 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Trim56Q80VI1 Gm14968-201ENSMUST00000155528 769 ntTSL 3 BASIC20.63■□□□□ 0.89
Trim56Q80VI1 Gm43799-201ENSMUST00000201845 579 ntBASIC20.63■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 22.6 ms