Protein–RNA interactions for Protein: Q6P9L4

Usp49, Ubiquitin carboxyl-terminal hydrolase 49, mousemouse

Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp49Q6P9L4 Adsl-204ENSMUST00000164806 1595 ntTSL 5 BASIC19.66■□□□□ 0.74
Usp49Q6P9L4 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Usp49Q6P9L4 Gm43272-201ENSMUST00000200599 1584 ntBASIC19.66■□□□□ 0.74
Usp49Q6P9L4 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Usp49Q6P9L4 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Usp49Q6P9L4 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Usp49Q6P9L4 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Usp49Q6P9L4 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Usp49Q6P9L4 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Usp49Q6P9L4 Gm10418-201ENSMUST00000100943 576 ntBASIC19.65■□□□□ 0.74
Usp49Q6P9L4 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Usp49Q6P9L4 Tnfaip8l2-201ENSMUST00000013851 1122 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Usp49Q6P9L4 Gm6576-201ENSMUST00000169678 883 ntBASIC19.65■□□□□ 0.74
Usp49Q6P9L4 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Usp49Q6P9L4 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC19.65■□□□□ 0.74
Usp49Q6P9L4 Gm44878-201ENSMUST00000205812 1295 ntBASIC19.65■□□□□ 0.74
Usp49Q6P9L4 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Usp49Q6P9L4 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Usp49Q6P9L4 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Usp49Q6P9L4 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Usp49Q6P9L4 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC19.64■□□□□ 0.74
Usp49Q6P9L4 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Usp49Q6P9L4 Cacfd1-205ENSMUST00000114007 2689 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Usp49Q6P9L4 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
Usp49Q6P9L4 Bcar1-201ENSMUST00000166232 3142 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
Usp49Q6P9L4 Gm11643-201ENSMUST00000119578 864 ntBASIC19.64■□□□□ 0.73
Usp49Q6P9L4 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Usp49Q6P9L4 AC166341.7-201ENSMUST00000221698 126 ntBASIC19.64■□□□□ 0.73
Usp49Q6P9L4 AC135637.1-201ENSMUST00000227750 365 ntBASIC19.64■□□□□ 0.73
Usp49Q6P9L4 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Usp49Q6P9L4 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Usp49Q6P9L4 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC19.64■□□□□ 0.73
Usp49Q6P9L4 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
Usp49Q6P9L4 9930012K11Rik-205ENSMUST00000153871 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Usp49Q6P9L4 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Usp49Q6P9L4 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC19.64■□□□□ 0.73
Usp49Q6P9L4 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
Usp49Q6P9L4 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC19.63■□□□□ 0.73
Usp49Q6P9L4 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Usp49Q6P9L4 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Usp49Q6P9L4 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC19.63■□□□□ 0.73
Usp49Q6P9L4 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
Usp49Q6P9L4 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Usp49Q6P9L4 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC19.63■□□□□ 0.73
Usp49Q6P9L4 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Usp49Q6P9L4 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Usp49Q6P9L4 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Usp49Q6P9L4 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Usp49Q6P9L4 Gm37292-201ENSMUST00000192062 758 ntBASIC19.63■□□□□ 0.73
Usp49Q6P9L4 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC19.63■□□□□ 0.73
Usp49Q6P9L4 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC19.63■□□□□ 0.73
Usp49Q6P9L4 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
Usp49Q6P9L4 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
Usp49Q6P9L4 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
Usp49Q6P9L4 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
Usp49Q6P9L4 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Usp49Q6P9L4 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Usp49Q6P9L4 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC19.62■□□□□ 0.73
Usp49Q6P9L4 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Usp49Q6P9L4 Tmem192-201ENSMUST00000026595 1122 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Usp49Q6P9L4 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Usp49Q6P9L4 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Usp49Q6P9L4 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Usp49Q6P9L4 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Usp49Q6P9L4 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Usp49Q6P9L4 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Usp49Q6P9L4 Nrn1-203ENSMUST00000223611 1443 ntBASIC19.61■□□□□ 0.73
Usp49Q6P9L4 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Usp49Q6P9L4 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
Usp49Q6P9L4 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC19.61■□□□□ 0.73
Usp49Q6P9L4 H2-K2-201ENSMUST00000174250 1049 ntBASIC19.61■□□□□ 0.73
Usp49Q6P9L4 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC19.61■□□□□ 0.73
Usp49Q6P9L4 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Usp49Q6P9L4 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC19.61■□□□□ 0.73
Usp49Q6P9L4 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
Usp49Q6P9L4 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Usp49Q6P9L4 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Usp49Q6P9L4 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
Usp49Q6P9L4 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Usp49Q6P9L4 Gm21974-201ENSMUST00000126662 2037 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
Usp49Q6P9L4 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Usp49Q6P9L4 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Usp49Q6P9L4 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Usp49Q6P9L4 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Usp49Q6P9L4 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC19.6■□□□□ 0.73
Usp49Q6P9L4 Gm5643-201ENSMUST00000117081 966 ntBASIC19.6■□□□□ 0.73
Usp49Q6P9L4 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Usp49Q6P9L4 Dnm1-216ENSMUST00000201494 2732 ntTSL 5 BASIC19.6■□□□□ 0.73
Usp49Q6P9L4 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Usp49Q6P9L4 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Usp49Q6P9L4 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
Usp49Q6P9L4 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Usp49Q6P9L4 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Usp49Q6P9L4 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Usp49Q6P9L4 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC19.59■□□□□ 0.73
Usp49Q6P9L4 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC19.59■□□□□ 0.73
Usp49Q6P9L4 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC19.59■□□□□ 0.73
Usp49Q6P9L4 Stmn1-201ENSMUST00000030636 1060 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Usp49Q6P9L4 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
Usp49Q6P9L4 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 23.2 ms