Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 Gm15853-202ENSMUST00000195518 2041 ntBASIC14.63□□□□□ -0.07
Col7a1Q63870 Mpig6b-201ENSMUST00000097337 2252 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Col7a1Q63870 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col7a1Q63870 Paxx-201ENSMUST00000114261 981 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col7a1Q63870 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
Col7a1Q63870 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col7a1Q63870 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col7a1Q63870 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Col7a1Q63870 Umad1-206ENSMUST00000160705 624 ntAPPRIS P4 TSL 2 BASIC14.62□□□□□ -0.07
Col7a1Q63870 AC164441.1-201ENSMUST00000221369 1004 ntTSL 5 BASIC14.62□□□□□ -0.07
Col7a1Q63870 Gm12359-201ENSMUST00000139017 1399 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Col7a1Q63870 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col7a1Q63870 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
Col7a1Q63870 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Col7a1Q63870 Atp6v1c2-208ENSMUST00000221129 1425 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
Col7a1Q63870 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col7a1Q63870 Cldn7-203ENSMUST00000108596 664 ntTSL 3 BASIC14.62□□□□□ -0.07
Col7a1Q63870 Nup188-205ENSMUST00000138666 534 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Col7a1Q63870 Fbxo17-205ENSMUST00000167118 861 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
Col7a1Q63870 Gm2431-201ENSMUST00000171531 519 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
Col7a1Q63870 Prdx4-201ENSMUST00000026328 990 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col7a1Q63870 Rpl28-201ENSMUST00000032597 1106 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col7a1Q63870 Mdk-202ENSMUST00000069423 773 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col7a1Q63870 Ahsa1-201ENSMUST00000021425 1377 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col7a1Q63870 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
Col7a1Q63870 Zkscan3-202ENSMUST00000116433 1421 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Col7a1Q63870 Iqck-201ENSMUST00000098087 1503 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
Col7a1Q63870 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Col7a1Q63870 Tpm1-215ENSMUST00000113705 1759 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Col7a1Q63870 Mafg-203ENSMUST00000106181 840 ntAPPRIS P1 TSL 3 BASIC14.62□□□□□ -0.07
Col7a1Q63870 Atp5g1-202ENSMUST00000107684 596 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col7a1Q63870 Psmc4-206ENSMUST00000140053 1244 ntTSL 5 BASIC14.62□□□□□ -0.07
Col7a1Q63870 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col7a1Q63870 Sox18-201ENSMUST00000054491 1620 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col7a1Q63870 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col7a1Q63870 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col7a1Q63870 Ghrhr-201ENSMUST00000063578 1550 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col7a1Q63870 Dpm3-202ENSMUST00000107462 827 ntAPPRIS P1 TSL 3 BASIC14.61□□□□□ -0.07
Col7a1Q63870 Gm14140-201ENSMUST00000119999 995 ntBASIC14.61□□□□□ -0.07
Col7a1Q63870 E530001F21Rik-201ENSMUST00000120991 730 ntBASIC14.61□□□□□ -0.07
Col7a1Q63870 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col7a1Q63870 Plekha4-206ENSMUST00000211155 2044 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
Col7a1Q63870 Rassf1-201ENSMUST00000010211 1727 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Col7a1Q63870 1500035N22Rik-201ENSMUST00000075081 865 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Col7a1Q63870 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col7a1Q63870 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col7a1Q63870 Gnb4-208ENSMUST00000193050 423 ntTSL 5 BASIC14.6□□□□□ -0.07
Col7a1Q63870 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col7a1Q63870 Apopt1-201ENSMUST00000040519 1065 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col7a1Q63870 Olfr1410-201ENSMUST00000079790 969 ntTSL 5 BASIC14.6□□□□□ -0.07
Col7a1Q63870 Mta3-203ENSMUST00000112350 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col7a1Q63870 Fuz-213ENSMUST00000209039 1453 ntTSL 5 BASIC14.6□□□□□ -0.07
Col7a1Q63870 Tm4sf4-201ENSMUST00000029377 1496 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col7a1Q63870 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col7a1Q63870 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Col7a1Q63870 Arl4a-201ENSMUST00000101472 1200 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col7a1Q63870 Spata33-204ENSMUST00000212346 715 ntTSL 2 BASIC14.6□□□□□ -0.07
Col7a1Q63870 Sfxn5-202ENSMUST00000059034 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col7a1Q63870 A330070K13Rik-201ENSMUST00000063656 633 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col7a1Q63870 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col7a1Q63870 AC154855.1-201ENSMUST00000227353 1458 ntBASIC14.6□□□□□ -0.07
Col7a1Q63870 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col7a1Q63870 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col7a1Q63870 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
Col7a1Q63870 1810062O18Rik-203ENSMUST00000129237 647 ntTSL 5 BASIC14.59□□□□□ -0.07
Col7a1Q63870 Gm40849-201ENSMUST00000222330 603 ntTSL 3 BASIC14.59□□□□□ -0.07
Col7a1Q63870 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col7a1Q63870 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Col7a1Q63870 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
Col7a1Q63870 Nckipsd-206ENSMUST00000195323 467 ntTSL 3 BASIC14.59□□□□□ -0.07
Col7a1Q63870 Iqcd-202ENSMUST00000094391 1673 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col7a1Q63870 Ptgis-202ENSMUST00000088041 1711 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Col7a1Q63870 Gm6277-202ENSMUST00000224036 2779 ntBASIC14.59□□□□□ -0.07
Col7a1Q63870 Nagk-201ENSMUST00000037376 1405 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col7a1Q63870 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col7a1Q63870 Ppcs-202ENSMUST00000106316 954 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Col7a1Q63870 Cdkn2d-201ENSMUST00000086374 1264 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Col7a1Q63870 Gm26608-201ENSMUST00000180740 1954 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Col7a1Q63870 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Col7a1Q63870 Aire-213ENSMUST00000148469 1618 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Col7a1Q63870 Gm38345-201ENSMUST00000192635 1748 ntBASIC14.58□□□□□ -0.08
Col7a1Q63870 Eif5a-207ENSMUST00000108610 1409 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col7a1Q63870 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col7a1Q63870 Msl3l2-201ENSMUST00000063138 2140 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col7a1Q63870 Prdm5-201ENSMUST00000031973 1488 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Col7a1Q63870 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
Col7a1Q63870 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col7a1Q63870 Xrcc2-204ENSMUST00000134972 464 ntTSL 3 BASIC14.58□□□□□ -0.08
Col7a1Q63870 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col7a1Q63870 Esd-207ENSMUST00000176957 1117 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Col7a1Q63870 Gm20661-203ENSMUST00000177368 900 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
Col7a1Q63870 Fmr1nb-201ENSMUST00000069731 799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col7a1Q63870 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col7a1Q63870 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col7a1Q63870 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col7a1Q63870 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
Col7a1Q63870 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC14.57□□□□□ -0.08
Col7a1Q63870 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Col7a1Q63870 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col7a1Q63870 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 291.3 ms