Protein–RNA interactions for Protein: Q62233

Six3, Homeobox protein SIX3, mousemouse

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six3Q62233 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC17.16■□□□□ 0.34
Six3Q62233 AC122769.4-201ENSMUST00000228166 901 ntBASIC17.16■□□□□ 0.34
Six3Q62233 Ltb-201ENSMUST00000025262 1160 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Six3Q62233 Ift74-201ENSMUST00000030311 2139 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
Six3Q62233 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
Six3Q62233 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Six3Q62233 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Six3Q62233 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Six3Q62233 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
Six3Q62233 Eps8-201ENSMUST00000058210 4567 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Six3Q62233 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Six3Q62233 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Six3Q62233 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
Six3Q62233 Gm12933-201ENSMUST00000120203 872 ntBASIC17.15■□□□□ 0.34
Six3Q62233 Mir2861-201ENSMUST00000175539 82 ntBASIC17.15■□□□□ 0.34
Six3Q62233 Gm5408-201ENSMUST00000197998 747 ntBASIC17.15■□□□□ 0.34
Six3Q62233 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Six3Q62233 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Six3Q62233 Tm7sf2-201ENSMUST00000025713 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Six3Q62233 Gm43808-201ENSMUST00000202534 2065 ntBASIC17.15■□□□□ 0.34
Six3Q62233 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC17.15■□□□□ 0.34
Six3Q62233 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
Six3Q62233 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Six3Q62233 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
Six3Q62233 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Six3Q62233 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Six3Q62233 Ttpal-202ENSMUST00000109408 1999 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Six3Q62233 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
Six3Q62233 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC17.15■□□□□ 0.34
Six3Q62233 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.34
Six3Q62233 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
Six3Q62233 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Six3Q62233 Fam129c-208ENSMUST00000143662 2267 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
Six3Q62233 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Six3Q62233 Pex6-201ENSMUST00000002840 3200 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Six3Q62233 Mfsd10-202ENSMUST00000114329 1906 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Six3Q62233 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Six3Q62233 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Six3Q62233 Lat2-202ENSMUST00000077636 1717 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Six3Q62233 Gm15847-201ENSMUST00000121417 1065 ntBASIC17.14■□□□□ 0.33
Six3Q62233 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC17.14■□□□□ 0.33
Six3Q62233 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC17.14■□□□□ 0.33
Six3Q62233 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
Six3Q62233 Fcrlb-201ENSMUST00000094337 1284 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Six3Q62233 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Six3Q62233 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Six3Q62233 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Six3Q62233 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
Six3Q62233 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Six3Q62233 Cacfd1-205ENSMUST00000114007 2689 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Six3Q62233 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Six3Q62233 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Six3Q62233 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Six3Q62233 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Six3Q62233 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Six3Q62233 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Six3Q62233 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Six3Q62233 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC17.13■□□□□ 0.33
Six3Q62233 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Six3Q62233 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Six3Q62233 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Six3Q62233 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Six3Q62233 Wnt4-201ENSMUST00000045747 4194 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Six3Q62233 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Six3Q62233 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Six3Q62233 Scarf2-201ENSMUST00000012161 3302 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Six3Q62233 Adsl-204ENSMUST00000164806 1595 ntTSL 5 BASIC17.12■□□□□ 0.33
Six3Q62233 AC125311.2-201ENSMUST00000227477 1940 ntBASIC17.12■□□□□ 0.33
Six3Q62233 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Six3Q62233 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Six3Q62233 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Six3Q62233 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Six3Q62233 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Six3Q62233 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Six3Q62233 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Six3Q62233 Ankrd9-202ENSMUST00000128353 2577 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Six3Q62233 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Six3Q62233 Igsf11-201ENSMUST00000023478 3443 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Six3Q62233 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Six3Q62233 Mpig6b-201ENSMUST00000097337 2252 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Six3Q62233 Stk32c-202ENSMUST00000165870 1883 ntTSL 5 BASIC17.12■□□□□ 0.33
Six3Q62233 Tdh-201ENSMUST00000022522 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Six3Q62233 Txnl4b-201ENSMUST00000034159 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Six3Q62233 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Six3Q62233 Nfe2l1-202ENSMUST00000107657 3869 ntAPPRIS P3 TSL 5 BASIC17.11■□□□□ 0.33
Six3Q62233 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Six3Q62233 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC17.11■□□□□ 0.33
Six3Q62233 Gm36033-202ENSMUST00000214827 745 ntTSL 2 BASIC17.11■□□□□ 0.33
Six3Q62233 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Six3Q62233 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Six3Q62233 Gng10-201ENSMUST00000041160 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Six3Q62233 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Six3Q62233 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC17.11■□□□□ 0.33
Six3Q62233 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC17.11■□□□□ 0.33
Six3Q62233 Gm7292-201ENSMUST00000194706 2527 ntBASIC17.11■□□□□ 0.33
Six3Q62233 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC17.11■□□□□ 0.33
Six3Q62233 Itgb1bp1-201ENSMUST00000076260 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Six3Q62233 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Six3Q62233 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC17.1■□□□□ 0.33
Six3Q62233 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC17.1■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 20.4 ms