Protein–RNA interactions for Protein: Q5R1I0

Trav6d-4, T cell receptor alpha variable 6D-4 (Fragment), mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6d-4Q5R1I0 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trav6d-4Q5R1I0 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trav6d-4Q5R1I0 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trav6d-4Q5R1I0 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
Trav6d-4Q5R1I0 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trav6d-4Q5R1I0 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Trav6d-4Q5R1I0 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Trav6d-4Q5R1I0 Grk6-206ENSMUST00000224995 2971 ntBASIC14.75□□□□□ -0.05
Trav6d-4Q5R1I0 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC14.75□□□□□ -0.05
Trav6d-4Q5R1I0 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC14.75□□□□□ -0.05
Trav6d-4Q5R1I0 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC14.75□□□□□ -0.05
Trav6d-4Q5R1I0 AC135963.1-201ENSMUST00000211640 717 ntBASIC14.75□□□□□ -0.05
Trav6d-4Q5R1I0 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Trav6d-4Q5R1I0 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Trav6d-4Q5R1I0 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Trav6d-4Q5R1I0 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Trav6d-4Q5R1I0 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Trav6d-4Q5R1I0 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
Trav6d-4Q5R1I0 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Trav6d-4Q5R1I0 Senp2-201ENSMUST00000023561 4499 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Trav6d-4Q5R1I0 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Trav6d-4Q5R1I0 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Trav6d-4Q5R1I0 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Trav6d-4Q5R1I0 Cdc14b-201ENSMUST00000039318 5859 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
Trav6d-4Q5R1I0 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Trav6d-4Q5R1I0 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Trav6d-4Q5R1I0 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
Trav6d-4Q5R1I0 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
Trav6d-4Q5R1I0 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Trav6d-4Q5R1I0 4430402I18Rik-205ENSMUST00000162110 1559 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
Trav6d-4Q5R1I0 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Trav6d-4Q5R1I0 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC14.74□□□□□ -0.05
Trav6d-4Q5R1I0 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Trav6d-4Q5R1I0 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC14.74□□□□□ -0.05
Trav6d-4Q5R1I0 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Trav6d-4Q5R1I0 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Trav6d-4Q5R1I0 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC14.74□□□□□ -0.05
Trav6d-4Q5R1I0 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Trav6d-4Q5R1I0 Gm30025-201ENSMUST00000218555 728 ntBASIC14.74□□□□□ -0.05
Trav6d-4Q5R1I0 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Trav6d-4Q5R1I0 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Trav6d-4Q5R1I0 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Trav6d-4Q5R1I0 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Trav6d-4Q5R1I0 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Trav6d-4Q5R1I0 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Trav6d-4Q5R1I0 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Trav6d-4Q5R1I0 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
Trav6d-4Q5R1I0 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Trav6d-4Q5R1I0 H2-Q7-202ENSMUST00000076256 1523 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
Trav6d-4Q5R1I0 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
Trav6d-4Q5R1I0 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
Trav6d-4Q5R1I0 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC14.73□□□□□ -0.05
Trav6d-4Q5R1I0 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
Trav6d-4Q5R1I0 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC14.73□□□□□ -0.05
Trav6d-4Q5R1I0 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC14.73□□□□□ -0.05
Trav6d-4Q5R1I0 Man2a1-201ENSMUST00000086723 6991 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Trav6d-4Q5R1I0 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Trav6d-4Q5R1I0 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Trav6d-4Q5R1I0 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Trav6d-4Q5R1I0 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Trav6d-4Q5R1I0 Gm5953-201ENSMUST00000220644 2616 ntBASIC14.73□□□□□ -0.05
Trav6d-4Q5R1I0 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC14.73□□□□□ -0.05
Trav6d-4Q5R1I0 Rasgrp2-224ENSMUST00000167240 2192 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
Trav6d-4Q5R1I0 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Trav6d-4Q5R1I0 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Trav6d-4Q5R1I0 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
Trav6d-4Q5R1I0 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Trav6d-4Q5R1I0 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Trav6d-4Q5R1I0 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC14.73□□□□□ -0.05
Trav6d-4Q5R1I0 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Trav6d-4Q5R1I0 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Trav6d-4Q5R1I0 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC14.72□□□□□ -0.05
Trav6d-4Q5R1I0 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Trav6d-4Q5R1I0 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Trav6d-4Q5R1I0 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Trav6d-4Q5R1I0 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Trav6d-4Q5R1I0 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Trav6d-4Q5R1I0 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Trav6d-4Q5R1I0 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Trav6d-4Q5R1I0 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Trav6d-4Q5R1I0 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Trav6d-4Q5R1I0 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Trav6d-4Q5R1I0 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Trav6d-4Q5R1I0 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Trav6d-4Q5R1I0 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC14.71□□□□□ -0.05
Trav6d-4Q5R1I0 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Trav6d-4Q5R1I0 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Trav6d-4Q5R1I0 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
Trav6d-4Q5R1I0 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
Trav6d-4Q5R1I0 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Trav6d-4Q5R1I0 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Trav6d-4Q5R1I0 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Trav6d-4Q5R1I0 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Trav6d-4Q5R1I0 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Trav6d-4Q5R1I0 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC14.71□□□□□ -0.05
Trav6d-4Q5R1I0 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Trav6d-4Q5R1I0 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Trav6d-4Q5R1I0 Gm38027-201ENSMUST00000192315 235 ntBASIC14.71□□□□□ -0.05
Trav6d-4Q5R1I0 Ndufa12-201ENSMUST00000020209 1110 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Trav6d-4Q5R1I0 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC14.71□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 29.4 ms