Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim40Q3UWA4 Unc13b-203ENSMUST00000107953 5034 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
Trim40Q3UWA4 Cdc25a-201ENSMUST00000094324 3632 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim40Q3UWA4 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
Trim40Q3UWA4 Gm44544-201ENSMUST00000207052 1844 ntBASIC16.48■□□□□ 0.23
Trim40Q3UWA4 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim40Q3UWA4 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim40Q3UWA4 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
Trim40Q3UWA4 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim40Q3UWA4 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Trim40Q3UWA4 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Trim40Q3UWA4 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim40Q3UWA4 Tmem145-202ENSMUST00000119703 1781 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
Trim40Q3UWA4 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim40Q3UWA4 Slit1-201ENSMUST00000025993 5045 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim40Q3UWA4 Tmem163-203ENSMUST00000160616 2657 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
Trim40Q3UWA4 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Trim40Q3UWA4 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim40Q3UWA4 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim40Q3UWA4 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
Trim40Q3UWA4 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trim40Q3UWA4 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Trim40Q3UWA4 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
Trim40Q3UWA4 Tlk2-204ENSMUST00000106941 3699 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trim40Q3UWA4 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Trim40Q3UWA4 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Trim40Q3UWA4 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Trim40Q3UWA4 Dgkz-201ENSMUST00000028667 3584 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trim40Q3UWA4 Ctu1-201ENSMUST00000038332 2475 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trim40Q3UWA4 Rbpms-203ENSMUST00000053251 2466 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Trim40Q3UWA4 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trim40Q3UWA4 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trim40Q3UWA4 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trim40Q3UWA4 Adgrb2-204ENSMUST00000106015 4982 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trim40Q3UWA4 Acp5-204ENSMUST00000213815 1419 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
Trim40Q3UWA4 Acp5-206ENSMUST00000217643 1447 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
Trim40Q3UWA4 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trim40Q3UWA4 Gm20628-201ENSMUST00000177363 3215 ntBASIC16.46■□□□□ 0.23
Trim40Q3UWA4 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC16.46■□□□□ 0.23
Trim40Q3UWA4 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
Trim40Q3UWA4 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Trim40Q3UWA4 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC16.46■□□□□ 0.23
Trim40Q3UWA4 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC16.46■□□□□ 0.23
Trim40Q3UWA4 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trim40Q3UWA4 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC16.46■□□□□ 0.23
Trim40Q3UWA4 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trim40Q3UWA4 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Trim40Q3UWA4 Smox-209ENSMUST00000110189 1919 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Trim40Q3UWA4 Gm37166-201ENSMUST00000195473 2474 ntBASIC16.46■□□□□ 0.23
Trim40Q3UWA4 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trim40Q3UWA4 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trim40Q3UWA4 Gm42918-201ENSMUST00000199249 1580 ntBASIC16.46■□□□□ 0.23
Trim40Q3UWA4 Gpr137b-201ENSMUST00000021738 2971 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trim40Q3UWA4 Xiap-203ENSMUST00000115094 6542 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
Trim40Q3UWA4 Sarm1-202ENSMUST00000108287 4868 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
Trim40Q3UWA4 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Trim40Q3UWA4 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Trim40Q3UWA4 Cadm1-204ENSMUST00000114548 4482 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Trim40Q3UWA4 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trim40Q3UWA4 Dgkz-202ENSMUST00000099709 3512 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
Trim40Q3UWA4 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
Trim40Q3UWA4 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC16.45■□□□□ 0.22
Trim40Q3UWA4 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trim40Q3UWA4 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trim40Q3UWA4 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trim40Q3UWA4 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
Trim40Q3UWA4 Cacna2d2-203ENSMUST00000164988 5542 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
Trim40Q3UWA4 Casd1-201ENSMUST00000015333 3961 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trim40Q3UWA4 Anks1-202ENSMUST00000088027 6781 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trim40Q3UWA4 Ankra2-203ENSMUST00000123924 2328 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Trim40Q3UWA4 Dlgap4-212ENSMUST00000169464 4851 ntTSL 5 BASIC16.45■□□□□ 0.22
Trim40Q3UWA4 Cdca7l-201ENSMUST00000021592 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trim40Q3UWA4 Foxq1-201ENSMUST00000042118 4843 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
Trim40Q3UWA4 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trim40Q3UWA4 Cd5-201ENSMUST00000025571 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trim40Q3UWA4 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Trim40Q3UWA4 Plppr5-202ENSMUST00000106473 4294 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Trim40Q3UWA4 Npas3-201ENSMUST00000101432 5879 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trim40Q3UWA4 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
Trim40Q3UWA4 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC16.44■□□□□ 0.22
Trim40Q3UWA4 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trim40Q3UWA4 Gm17484-201ENSMUST00000167899 2322 ntTSL 2 BASIC16.44■□□□□ 0.22
Trim40Q3UWA4 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
Trim40Q3UWA4 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC16.44■□□□□ 0.22
Trim40Q3UWA4 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC16.44■□□□□ 0.22
Trim40Q3UWA4 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trim40Q3UWA4 Znrf4-201ENSMUST00000052211 1236 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
Trim40Q3UWA4 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC16.44■□□□□ 0.22
Trim40Q3UWA4 Plpp6-201ENSMUST00000045674 2859 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
Trim40Q3UWA4 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trim40Q3UWA4 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trim40Q3UWA4 Cacna1h-201ENSMUST00000078496 8220 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trim40Q3UWA4 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trim40Q3UWA4 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Trim40Q3UWA4 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Trim40Q3UWA4 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trim40Q3UWA4 Heyl-201ENSMUST00000040821 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trim40Q3UWA4 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trim40Q3UWA4 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
Trim40Q3UWA4 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 22.9 ms