Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Agbl5-215ENSMUST00000202060 3121 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Upf3bQ3ULL6 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Upf3bQ3ULL6 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.59
Upf3bQ3ULL6 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC18.75■□□□□ 0.59
Upf3bQ3ULL6 Dohh-206ENSMUST00000131968 672 ntAPPRIS P1 TSL 3 BASIC18.75■□□□□ 0.59
Upf3bQ3ULL6 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
Upf3bQ3ULL6 Cck-201ENSMUST00000035120 691 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Upf3bQ3ULL6 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Upf3bQ3ULL6 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Upf3bQ3ULL6 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Upf3bQ3ULL6 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Upf3bQ3ULL6 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Upf3bQ3ULL6 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Upf3bQ3ULL6 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Upf3bQ3ULL6 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC18.75■□□□□ 0.59
Upf3bQ3ULL6 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Upf3bQ3ULL6 Tsnax-202ENSMUST00000212603 2169 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Upf3bQ3ULL6 Paqr7-201ENSMUST00000081525 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Upf3bQ3ULL6 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC18.75■□□□□ 0.59
Upf3bQ3ULL6 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
Upf3bQ3ULL6 Adrb3-202ENSMUST00000117565 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Upf3bQ3ULL6 Capg-202ENSMUST00000114071 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Upf3bQ3ULL6 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Upf3bQ3ULL6 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Upf3bQ3ULL6 Etnk1-204ENSMUST00000205256 2647 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Upf3bQ3ULL6 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Upf3bQ3ULL6 Prcc-201ENSMUST00000005015 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Upf3bQ3ULL6 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Upf3bQ3ULL6 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
Upf3bQ3ULL6 Naxd-201ENSMUST00000033901 1359 ntTSL 2 BASIC18.74■□□□□ 0.59
Upf3bQ3ULL6 Nudt22-203ENSMUST00000180765 1073 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
Upf3bQ3ULL6 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC18.74■□□□□ 0.59
Upf3bQ3ULL6 Diaph1-205ENSMUST00000115634 5666 ntAPPRIS P3 TSL 5 BASIC18.74■□□□□ 0.59
Upf3bQ3ULL6 CT010444.2-201ENSMUST00000217877 1629 ntBASIC18.74■□□□□ 0.59
Upf3bQ3ULL6 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Upf3bQ3ULL6 Wbp1-202ENSMUST00000113936 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Upf3bQ3ULL6 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC18.73■□□□□ 0.59
Upf3bQ3ULL6 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Upf3bQ3ULL6 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
Upf3bQ3ULL6 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Upf3bQ3ULL6 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC18.73■□□□□ 0.59
Upf3bQ3ULL6 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Upf3bQ3ULL6 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Upf3bQ3ULL6 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Upf3bQ3ULL6 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Upf3bQ3ULL6 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Upf3bQ3ULL6 Gm17035-201ENSMUST00000170557 419 ntTSL 3 BASIC18.73■□□□□ 0.59
Upf3bQ3ULL6 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC18.73■□□□□ 0.59
Upf3bQ3ULL6 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Upf3bQ3ULL6 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Upf3bQ3ULL6 Camsap3-212ENSMUST00000208240 2572 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Upf3bQ3ULL6 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Upf3bQ3ULL6 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Upf3bQ3ULL6 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
Upf3bQ3ULL6 AC153881.1-201ENSMUST00000214448 284 ntBASIC18.72■□□□□ 0.59
Upf3bQ3ULL6 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
Upf3bQ3ULL6 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Upf3bQ3ULL6 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Upf3bQ3ULL6 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Upf3bQ3ULL6 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC18.72■□□□□ 0.59
Upf3bQ3ULL6 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Upf3bQ3ULL6 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Upf3bQ3ULL6 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Upf3bQ3ULL6 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Upf3bQ3ULL6 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
Upf3bQ3ULL6 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Upf3bQ3ULL6 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Upf3bQ3ULL6 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Upf3bQ3ULL6 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Upf3bQ3ULL6 Adam15-203ENSMUST00000107446 1686 ntTSL 5 BASIC18.71■□□□□ 0.59
Upf3bQ3ULL6 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Upf3bQ3ULL6 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC18.71■□□□□ 0.59
Upf3bQ3ULL6 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC18.71■□□□□ 0.59
Upf3bQ3ULL6 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Upf3bQ3ULL6 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Upf3bQ3ULL6 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC18.71■□□□□ 0.59
Upf3bQ3ULL6 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Upf3bQ3ULL6 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Upf3bQ3ULL6 Gm43702-201ENSMUST00000198772 2546 ntBASIC18.71■□□□□ 0.59
Upf3bQ3ULL6 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Upf3bQ3ULL6 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC18.71■□□□□ 0.59
Upf3bQ3ULL6 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Upf3bQ3ULL6 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
Upf3bQ3ULL6 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.58
Upf3bQ3ULL6 Tmf1-201ENSMUST00000095664 5732 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
Upf3bQ3ULL6 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Upf3bQ3ULL6 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC18.7■□□□□ 0.58
Upf3bQ3ULL6 C030014I23Rik-201ENSMUST00000080911 1810 ntBASIC18.7■□□□□ 0.58
Upf3bQ3ULL6 Gm16712-201ENSMUST00000181962 1960 ntTSL 2 BASIC18.7■□□□□ 0.58
Upf3bQ3ULL6 Zdhhc6-201ENSMUST00000076891 2263 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Upf3bQ3ULL6 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Upf3bQ3ULL6 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Upf3bQ3ULL6 Tlk2-201ENSMUST00000015107 3212 ntAPPRIS P3 TSL 5 BASIC18.7■□□□□ 0.58
Upf3bQ3ULL6 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Upf3bQ3ULL6 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Upf3bQ3ULL6 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC18.7■□□□□ 0.58
Upf3bQ3ULL6 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC18.7■□□□□ 0.58
Upf3bQ3ULL6 Aprt-201ENSMUST00000006764 849 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Upf3bQ3ULL6 Pdx1-201ENSMUST00000085591 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Upf3bQ3ULL6 Diras1-201ENSMUST00000055125 2953 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 46.4 ms