Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC15.16■□□□□ 0.02
Nkx3-1P97436 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Nkx3-1P97436 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Nkx3-1P97436 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Nkx3-1P97436 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Nkx3-1P97436 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Nkx3-1P97436 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC15.15■□□□□ 0.02
Nkx3-1P97436 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Nkx3-1P97436 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC15.15■□□□□ 0.02
Nkx3-1P97436 Gm10418-201ENSMUST00000100943 576 ntBASIC15.15■□□□□ 0.02
Nkx3-1P97436 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Nkx3-1P97436 Psmd13-209ENSMUST00000164681 726 ntTSL 5 BASIC15.15■□□□□ 0.02
Nkx3-1P97436 Gm22697-201ENSMUST00000175194 63 ntBASIC15.15■□□□□ 0.02
Nkx3-1P97436 Gm6345-202ENSMUST00000180900 204 ntBASIC15.15■□□□□ 0.02
Nkx3-1P97436 Gm4217-201ENSMUST00000182243 1002 ntBASIC15.15■□□□□ 0.02
Nkx3-1P97436 Gm28793-201ENSMUST00000190845 413 ntTSL 5 BASIC15.15■□□□□ 0.02
Nkx3-1P97436 D230030E09Rik-201ENSMUST00000222459 884 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Nkx3-1P97436 Prss27-201ENSMUST00000059482 1253 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Nkx3-1P97436 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Nkx3-1P97436 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Nkx3-1P97436 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Nkx3-1P97436 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC15.15■□□□□ 0.02
Nkx3-1P97436 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC15.14■□□□□ 0.01
Nkx3-1P97436 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Nkx3-1P97436 Rogdi-207ENSMUST00000202281 1355 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Nkx3-1P97436 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC15.14■□□□□ 0.01
Nkx3-1P97436 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC15.14■□□□□ 0.01
Nkx3-1P97436 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Nkx3-1P97436 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Nkx3-1P97436 Gm16105-201ENSMUST00000156926 697 ntTSL 3 BASIC15.14■□□□□ 0.01
Nkx3-1P97436 Fbxo9-203ENSMUST00000159099 1201 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Nkx3-1P97436 4930544I03Rik-201ENSMUST00000181184 1276 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Nkx3-1P97436 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC15.14■□□□□ 0.01
Nkx3-1P97436 AC134329.2-201ENSMUST00000217897 428 ntBASIC15.14■□□□□ 0.01
Nkx3-1P97436 Gng11-201ENSMUST00000031670 919 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Nkx3-1P97436 Rpl39l-201ENSMUST00000044103 805 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Nkx3-1P97436 Vps37d-202ENSMUST00000076203 1286 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Nkx3-1P97436 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Nkx3-1P97436 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC15.14■□□□□ 0.01
Nkx3-1P97436 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Nkx3-1P97436 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Nkx3-1P97436 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Nkx3-1P97436 Acvr1c-204ENSMUST00000112608 1497 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Nkx3-1P97436 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Nkx3-1P97436 Zhx1-202ENSMUST00000110168 5212 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Nkx3-1P97436 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC15.13■□□□□ 0.01
Nkx3-1P97436 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Nkx3-1P97436 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC15.13■□□□□ 0.01
Nkx3-1P97436 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Nkx3-1P97436 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Nkx3-1P97436 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Nkx3-1P97436 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Nkx3-1P97436 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Nkx3-1P97436 Schip1-203ENSMUST00000170788 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Nkx3-1P97436 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC15.13■□□□□ 0.01
Nkx3-1P97436 Gm45442-201ENSMUST00000210038 411 ntTSL 3 BASIC15.13■□□□□ 0.01
Nkx3-1P97436 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Nkx3-1P97436 Lce1h-201ENSMUST00000051521 706 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Nkx3-1P97436 Fgf9-202ENSMUST00000074654 1198 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Nkx3-1P97436 Txndc5-201ENSMUST00000035988 2843 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Nkx3-1P97436 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Nkx3-1P97436 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
Nkx3-1P97436 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Nkx3-1P97436 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Nkx3-1P97436 Scamp4-201ENSMUST00000079883 1804 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Nkx3-1P97436 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Nkx3-1P97436 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Nkx3-1P97436 Gm6627-201ENSMUST00000218299 2386 ntBASIC15.12■□□□□ 0.01
Nkx3-1P97436 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Nkx3-1P97436 Tgds-204ENSMUST00000228543 1594 ntBASIC15.12■□□□□ 0.01
Nkx3-1P97436 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
Nkx3-1P97436 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
Nkx3-1P97436 Spint2-202ENSMUST00000108236 1211 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Nkx3-1P97436 Gm13401-201ENSMUST00000117074 291 ntBASIC15.12■□□□□ 0.01
Nkx3-1P97436 Gm7638-201ENSMUST00000121348 967 ntBASIC15.12■□□□□ 0.01
Nkx3-1P97436 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Nkx3-1P97436 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC15.12■□□□□ 0.01
Nkx3-1P97436 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC15.12■□□□□ 0.01
Nkx3-1P97436 Auh-201ENSMUST00000021913 1320 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Nkx3-1P97436 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Nkx3-1P97436 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Nkx3-1P97436 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Nkx3-1P97436 Nbea-201ENSMUST00000029374 10986 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Nkx3-1P97436 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Nkx3-1P97436 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Nkx3-1P97436 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
Nkx3-1P97436 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
Nkx3-1P97436 Tm6sf2-202ENSMUST00000110160 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Nkx3-1P97436 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Nkx3-1P97436 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Nkx3-1P97436 Eif4e2-205ENSMUST00000113232 1125 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Nkx3-1P97436 Gm16061-201ENSMUST00000122167 857 ntBASIC15.11■□□□□ 0.01
Nkx3-1P97436 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Nkx3-1P97436 Gm24841-201ENSMUST00000158676 357 ntBASIC15.11■□□□□ 0.01
Nkx3-1P97436 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC15.11■□□□□ 0.01
Nkx3-1P97436 Muc2-203ENSMUST00000179227 399 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Nkx3-1P97436 Gm33142-201ENSMUST00000193913 867 ntBASIC15.11■□□□□ 0.01
Nkx3-1P97436 Pldi-201ENSMUST00000036304 853 ntTSL 2 BASIC15.11■□□□□ 0.01
Nkx3-1P97436 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
Nkx3-1P97436 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 23.1 ms