Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Gm7889-201ENSMUST00000185591 958 ntBASIC16.62■□□□□ 0.25
Msx1P13297 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC16.62■□□□□ 0.25
Msx1P13297 Gm10138-203ENSMUST00000206952 366 ntBASIC16.62■□□□□ 0.25
Msx1P13297 Wdr74-202ENSMUST00000210512 1078 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Msx1P13297 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Msx1P13297 Rasgrp2-224ENSMUST00000167240 2192 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Msx1P13297 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Msx1P13297 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Msx1P13297 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Msx1P13297 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Msx1P13297 Gm43182-201ENSMUST00000199476 2528 ntBASIC16.61■□□□□ 0.25
Msx1P13297 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Msx1P13297 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Msx1P13297 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
Msx1P13297 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
Msx1P13297 Mir142hg-201ENSMUST00000123700 269 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Msx1P13297 Dusp13-213ENSMUST00000184703 902 ntAPPRIS ALT1 TSL 5 BASIC16.61■□□□□ 0.25
Msx1P13297 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Msx1P13297 Mrpl28-201ENSMUST00000025014 1048 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Msx1P13297 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Msx1P13297 Mtag2-201ENSMUST00000058665 714 ntBASIC16.61■□□□□ 0.25
Msx1P13297 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
Msx1P13297 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Msx1P13297 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Msx1P13297 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Msx1P13297 Gm44544-201ENSMUST00000207052 1844 ntBASIC16.61■□□□□ 0.25
Msx1P13297 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
Msx1P13297 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC16.61■□□□□ 0.25
Msx1P13297 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Msx1P13297 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Msx1P13297 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Msx1P13297 Arhgap35-201ENSMUST00000075845 9147 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Msx1P13297 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC16.6■□□□□ 0.25
Msx1P13297 Zfp800-203ENSMUST00000115321 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Msx1P13297 Gm42939-201ENSMUST00000197514 2205 ntBASIC16.6■□□□□ 0.25
Msx1P13297 D3Ertd751e-205ENSMUST00000120167 773 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
Msx1P13297 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Msx1P13297 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
Msx1P13297 Cnn1-203ENSMUST00000214601 1225 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Msx1P13297 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Msx1P13297 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
Msx1P13297 Shroom3-211ENSMUST00000225438 5742 ntBASIC16.6■□□□□ 0.25
Msx1P13297 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
Msx1P13297 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Msx1P13297 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Msx1P13297 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Msx1P13297 Dmtn-207ENSMUST00000228001 2437 ntBASIC16.59■□□□□ 0.25
Msx1P13297 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Msx1P13297 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Msx1P13297 Mag-207ENSMUST00000191081 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Msx1P13297 Nxt1-202ENSMUST00000109961 1116 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
Msx1P13297 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
Msx1P13297 Bola2-203ENSMUST00000130498 1266 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Msx1P13297 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Msx1P13297 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC16.59■□□□□ 0.25
Msx1P13297 A430033K04Rik-204ENSMUST00000200521 1110 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Msx1P13297 Gm18025-201ENSMUST00000221733 862 ntBASIC16.59■□□□□ 0.25
Msx1P13297 Timm23-208ENSMUST00000226683 750 ntBASIC16.59■□□□□ 0.25
Msx1P13297 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Msx1P13297 A430033K04Rik-201ENSMUST00000032590 1109 ntTSL 5 BASIC16.59■□□□□ 0.25
Msx1P13297 Nxt1-201ENSMUST00000047177 956 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Msx1P13297 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
Msx1P13297 Zfp783-201ENSMUST00000095946 670 ntBASIC16.59■□□□□ 0.25
Msx1P13297 3110070M22Rik-201ENSMUST00000099148 1123 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
Msx1P13297 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
Msx1P13297 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Msx1P13297 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Msx1P13297 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC16.59■□□□□ 0.25
Msx1P13297 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC16.59■□□□□ 0.25
Msx1P13297 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Msx1P13297 Gm5828-201ENSMUST00000071842 1860 ntBASIC16.59■□□□□ 0.25
Msx1P13297 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
Msx1P13297 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Msx1P13297 Snx30-201ENSMUST00000030080 7314 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Msx1P13297 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Msx1P13297 Tekt5-202ENSMUST00000115831 1277 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
Msx1P13297 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Msx1P13297 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Msx1P13297 Smim12-201ENSMUST00000142029 1022 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Msx1P13297 Fxyd5-208ENSMUST00000161805 1166 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
Msx1P13297 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC16.58■□□□□ 0.24
Msx1P13297 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Msx1P13297 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
Msx1P13297 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Msx1P13297 Trim14-201ENSMUST00000046897 1429 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Msx1P13297 Pon1-201ENSMUST00000002663 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Msx1P13297 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC16.58■□□□□ 0.24
Msx1P13297 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC16.58■□□□□ 0.24
Msx1P13297 Ankrd17-202ENSMUST00000081914 8057 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
Msx1P13297 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Msx1P13297 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Msx1P13297 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Msx1P13297 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Msx1P13297 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Msx1P13297 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Msx1P13297 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Msx1P13297 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Msx1P13297 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Msx1P13297 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC16.57■□□□□ 0.24
Msx1P13297 Gm15375-201ENSMUST00000119510 849 ntBASIC16.57■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 28.1 ms