Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Col1a1P11087 Pyy-201ENSMUST00000017455 555 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col1a1P11087 Bex3-204ENSMUST00000178632 933 ntAPPRIS P3 TSL 2 BASIC20.56■□□□□ 0.88
Col1a1P11087 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
Col1a1P11087 Rln3-201ENSMUST00000061923 634 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col1a1P11087 Tnfrsf25-201ENSMUST00000025706 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col1a1P11087 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC20.56■□□□□ 0.88
Col1a1P11087 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Col1a1P11087 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC20.55■□□□□ 0.88
Col1a1P11087 Pou2f2-202ENSMUST00000108413 1599 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Col1a1P11087 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC20.55■□□□□ 0.88
Col1a1P11087 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC20.55■□□□□ 0.88
Col1a1P11087 Slc19a2-204ENSMUST00000169394 894 ntTSL 5 BASIC20.55■□□□□ 0.88
Col1a1P11087 Gm28659-201ENSMUST00000188013 759 ntBASIC20.55■□□□□ 0.88
Col1a1P11087 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Col1a1P11087 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Col1a1P11087 2810468N07Rik-201ENSMUST00000163493 1349 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Col1a1P11087 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Col1a1P11087 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
Col1a1P11087 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Col1a1P11087 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Col1a1P11087 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Col1a1P11087 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
Col1a1P11087 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Col1a1P11087 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Col1a1P11087 Btn1a1-202ENSMUST00000110434 1077 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Col1a1P11087 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Col1a1P11087 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
Col1a1P11087 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Col1a1P11087 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Col1a1P11087 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Col1a1P11087 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Col1a1P11087 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Col1a1P11087 Ptgis-202ENSMUST00000088041 1711 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Col1a1P11087 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
Col1a1P11087 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC20.53■□□□□ 0.88
Col1a1P11087 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Col1a1P11087 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Col1a1P11087 Man1a-203ENSMUST00000105470 2847 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
Col1a1P11087 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Col1a1P11087 AC154855.1-201ENSMUST00000227353 1458 ntBASIC20.53■□□□□ 0.88
Col1a1P11087 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC20.52■□□□□ 0.88
Col1a1P11087 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC20.52■□□□□ 0.88
Col1a1P11087 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Col1a1P11087 Gm15794-201ENSMUST00000120182 631 ntBASIC20.52■□□□□ 0.88
Col1a1P11087 Gm28051-201ENSMUST00000179306 445 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
Col1a1P11087 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
Col1a1P11087 9130024F11Rik-201ENSMUST00000135238 1300 ntTSL 2 BASIC20.52■□□□□ 0.88
Col1a1P11087 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Col1a1P11087 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
Col1a1P11087 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Col1a1P11087 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC20.52■□□□□ 0.87
Col1a1P11087 Aldh2-202ENSMUST00000129753 1799 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Col1a1P11087 Alas2-201ENSMUST00000066337 2037 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col1a1P11087 Gm27459-201ENSMUST00000184860 107 ntBASIC20.51■□□□□ 0.87
Col1a1P11087 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
Col1a1P11087 Ptcra-201ENSMUST00000041012 1283 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col1a1P11087 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col1a1P11087 Tm6sf2-201ENSMUST00000049197 1418 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col1a1P11087 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col1a1P11087 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Col1a1P11087 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Col1a1P11087 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col1a1P11087 Mta3-203ENSMUST00000112350 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col1a1P11087 Prps1l3-201ENSMUST00000139049 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col1a1P11087 AW011738-201ENSMUST00000105140 1848 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
Col1a1P11087 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
Col1a1P11087 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Col1a1P11087 Rnf5-201ENSMUST00000015622 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Col1a1P11087 Mir8098-201ENSMUST00000184011 137 ntBASIC20.5■□□□□ 0.87
Col1a1P11087 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Col1a1P11087 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Col1a1P11087 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Col1a1P11087 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
Col1a1P11087 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Col1a1P11087 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Col1a1P11087 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Col1a1P11087 Cnpy1-201ENSMUST00000117098 2661 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Col1a1P11087 Tm9sf2-203ENSMUST00000171318 1494 ntTSL 5 BASIC20.5■□□□□ 0.87
Col1a1P11087 Kxd1-202ENSMUST00000117580 696 ntTSL 5 BASIC20.5■□□□□ 0.87
Col1a1P11087 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Col1a1P11087 Cgrrf1-204ENSMUST00000140114 419 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Col1a1P11087 Faap20-210ENSMUST00000178473 1076 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
Col1a1P11087 Gm6443-201ENSMUST00000203599 874 ntBASIC20.5■□□□□ 0.87
Col1a1P11087 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
Col1a1P11087 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Col1a1P11087 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Col1a1P11087 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC20.49■□□□□ 0.87
Col1a1P11087 Tbcb-201ENSMUST00000006254 1416 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Col1a1P11087 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Col1a1P11087 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC20.49■□□□□ 0.87
Col1a1P11087 Gm13884-201ENSMUST00000118103 829 ntBASIC20.49■□□□□ 0.87
Col1a1P11087 Acaa1a-203ENSMUST00000175743 1219 ntTSL 5 BASIC20.49■□□□□ 0.87
Col1a1P11087 Acaa1a-207ENSMUST00000176397 996 ntTSL 5 BASIC20.49■□□□□ 0.87
Col1a1P11087 Gm32031-203ENSMUST00000208993 649 ntTSL 2 BASIC20.49■□□□□ 0.87
Col1a1P11087 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
Col1a1P11087 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Col1a1P11087 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Col1a1P11087 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Col1a1P11087 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 21.9 ms