Protein–RNA interactions for Protein: Q9QZR9

Col4a4, Collagen alpha-4(IV) chain, mousemouse

Predictions only

Length 1,682 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col4a4Q9QZR9 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col4a4Q9QZR9 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Col4a4Q9QZR9 1110004F10Rik-203ENSMUST00000106608 927 ntTSL 3 BASIC17.71■□□□□ 0.43
Col4a4Q9QZR9 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC17.71■□□□□ 0.43
Col4a4Q9QZR9 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC17.71■□□□□ 0.43
Col4a4Q9QZR9 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC17.71■□□□□ 0.43
Col4a4Q9QZR9 Rpl13a-204ENSMUST00000209711 495 ntTSL 3 BASIC17.71■□□□□ 0.43
Col4a4Q9QZR9 Ube2f-201ENSMUST00000059743 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Col4a4Q9QZR9 Coq10b-202ENSMUST00000087617 834 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
Col4a4Q9QZR9 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Col4a4Q9QZR9 Sgta-201ENSMUST00000005067 1969 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Col4a4Q9QZR9 Gm6190-201ENSMUST00000220683 1374 ntBASIC17.71■□□□□ 0.43
Col4a4Q9QZR9 Plekha4-206ENSMUST00000211155 2044 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
Col4a4Q9QZR9 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Col4a4Q9QZR9 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Col4a4Q9QZR9 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Col4a4Q9QZR9 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC17.71■□□□□ 0.43
Col4a4Q9QZR9 Gm4995-201ENSMUST00000117247 432 ntBASIC17.71■□□□□ 0.42
Col4a4Q9QZR9 Rps27l-203ENSMUST00000127896 575 ntTSL 5 BASIC17.71■□□□□ 0.42
Col4a4Q9QZR9 Dpf3-205ENSMUST00000177801 1092 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
Col4a4Q9QZR9 Nek4-204ENSMUST00000226833 1252 ntAPPRIS ALT2 BASIC17.71■□□□□ 0.42
Col4a4Q9QZR9 Tamm41-201ENSMUST00000032461 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
Col4a4Q9QZR9 Ndufb7-201ENSMUST00000036996 623 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
Col4a4Q9QZR9 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC17.71■□□□□ 0.42
Col4a4Q9QZR9 Aldh2-202ENSMUST00000129753 1799 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Col4a4Q9QZR9 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Col4a4Q9QZR9 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Col4a4Q9QZR9 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC17.7■□□□□ 0.42
Col4a4Q9QZR9 Erich2-201ENSMUST00000100041 1749 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Col4a4Q9QZR9 Krt15-201ENSMUST00000107411 1700 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Col4a4Q9QZR9 Brsk2-205ENSMUST00000172652 2501 ntTSL 5 BASIC17.7■□□□□ 0.42
Col4a4Q9QZR9 Gm44618-201ENSMUST00000208431 2262 ntTSL 3 BASIC17.7■□□□□ 0.42
Col4a4Q9QZR9 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC17.7■□□□□ 0.42
Col4a4Q9QZR9 Rplp2-203ENSMUST00000106004 421 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
Col4a4Q9QZR9 Gm15372-201ENSMUST00000120729 834 ntBASIC17.7■□□□□ 0.42
Col4a4Q9QZR9 Mcub-204ENSMUST00000153506 1005 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Col4a4Q9QZR9 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC17.7■□□□□ 0.42
Col4a4Q9QZR9 Gm9925-201ENSMUST00000066583 483 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
Col4a4Q9QZR9 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Col4a4Q9QZR9 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Col4a4Q9QZR9 Txndc5-201ENSMUST00000035988 2843 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col4a4Q9QZR9 Klk12-202ENSMUST00000107970 1115 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Col4a4Q9QZR9 Tdrkh-208ENSMUST00000200486 1231 ntTSL 3 BASIC17.69■□□□□ 0.42
Col4a4Q9QZR9 1700025J12Rik-201ENSMUST00000205586 630 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Col4a4Q9QZR9 4930431F12Rik-201ENSMUST00000079389 429 ntTSL 5 BASIC17.69■□□□□ 0.42
Col4a4Q9QZR9 Tmem116-203ENSMUST00000094357 1366 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Col4a4Q9QZR9 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col4a4Q9QZR9 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC17.69■□□□□ 0.42
Col4a4Q9QZR9 Zfp24-203ENSMUST00000153337 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col4a4Q9QZR9 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col4a4Q9QZR9 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col4a4Q9QZR9 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col4a4Q9QZR9 Ndufb6-202ENSMUST00000108108 480 ntTSL 3 BASIC17.68■□□□□ 0.42
Col4a4Q9QZR9 Fbxo6-208ENSMUST00000168503 1240 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
Col4a4Q9QZR9 Gm7063-201ENSMUST00000186840 981 ntBASIC17.68■□□□□ 0.42
Col4a4Q9QZR9 Gm29629-201ENSMUST00000187926 386 ntTSL 3 BASIC17.68■□□□□ 0.42
Col4a4Q9QZR9 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col4a4Q9QZR9 Ndufb10-201ENSMUST00000045602 732 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col4a4Q9QZR9 Man1a-203ENSMUST00000105470 2847 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Col4a4Q9QZR9 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col4a4Q9QZR9 Emd-201ENSMUST00000002029 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col4a4Q9QZR9 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC17.68■□□□□ 0.42
Col4a4Q9QZR9 Isyna1-204ENSMUST00000210005 1914 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Col4a4Q9QZR9 Gm11779-201ENSMUST00000118541 368 ntBASIC17.67■□□□□ 0.42
Col4a4Q9QZR9 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC17.67■□□□□ 0.42
Col4a4Q9QZR9 Timm10b-211ENSMUST00000210350 529 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
Col4a4Q9QZR9 Eif5a-203ENSMUST00000071026 1286 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col4a4Q9QZR9 Mtus2-201ENSMUST00000071878 1211 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Col4a4Q9QZR9 Gm32996-201ENSMUST00000199828 1447 ntBASIC17.67■□□□□ 0.42
Col4a4Q9QZR9 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col4a4Q9QZR9 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col4a4Q9QZR9 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col4a4Q9QZR9 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col4a4Q9QZR9 Olfr1564-201ENSMUST00000112162 1091 ntAPPRIS P2 BASIC17.67■□□□□ 0.42
Col4a4Q9QZR9 Ccl27a-217ENSMUST00000155240 343 ntTSL 2 BASIC17.67■□□□□ 0.42
Col4a4Q9QZR9 Gm8000-201ENSMUST00000188378 592 ntBASIC17.67■□□□□ 0.42
Col4a4Q9QZR9 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Col4a4Q9QZR9 Izumo1r-201ENSMUST00000034409 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col4a4Q9QZR9 Pecr-202ENSMUST00000097698 932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col4a4Q9QZR9 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col4a4Q9QZR9 Dok5-201ENSMUST00000029075 1768 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col4a4Q9QZR9 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col4a4Q9QZR9 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col4a4Q9QZR9 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col4a4Q9QZR9 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col4a4Q9QZR9 Mrps16-201ENSMUST00000061444 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col4a4Q9QZR9 Pisd-201ENSMUST00000061895 2183 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col4a4Q9QZR9 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col4a4Q9QZR9 Proc-201ENSMUST00000171765 1566 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Col4a4Q9QZR9 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Col4a4Q9QZR9 Mrps18c-203ENSMUST00000112901 820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col4a4Q9QZR9 Gm1401-201ENSMUST00000122048 772 ntBASIC17.66■□□□□ 0.42
Col4a4Q9QZR9 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC17.66■□□□□ 0.42
Col4a4Q9QZR9 Pafah1b3-207ENSMUST00000155118 679 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Col4a4Q9QZR9 Eapp-203ENSMUST00000160085 676 ntTSL 3 BASIC17.66■□□□□ 0.42
Col4a4Q9QZR9 4930477E14Rik-201ENSMUST00000181412 621 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Col4a4Q9QZR9 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Col4a4Q9QZR9 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col4a4Q9QZR9 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
Col4a4Q9QZR9 Nr1h2-204ENSMUST00000107912 1839 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 16.9 ms