Protein–RNA interactions for Protein: Q9D883

U2af1, Splicing factor U2AF 35 kDa subunit, mousemouse

Known RBP Predictions only

Length 239 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
U2af1Q9D883 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
U2af1Q9D883 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
U2af1Q9D883 Gm16897-201ENSMUST00000180780 2492 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
U2af1Q9D883 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC23.15■■□□□ 1.3
U2af1Q9D883 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC23.15■■□□□ 1.3
U2af1Q9D883 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
U2af1Q9D883 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
U2af1Q9D883 Fbxo24-202ENSMUST00000111002 2306 ntTSL 5 BASIC23.15■■□□□ 1.3
U2af1Q9D883 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
U2af1Q9D883 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC23.15■■□□□ 1.3
U2af1Q9D883 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC23.14■■□□□ 1.3
U2af1Q9D883 Dmtn-207ENSMUST00000228001 2437 ntBASIC23.14■■□□□ 1.3
U2af1Q9D883 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
U2af1Q9D883 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
U2af1Q9D883 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
U2af1Q9D883 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC23.14■■□□□ 1.29
U2af1Q9D883 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC23.14■■□□□ 1.29
U2af1Q9D883 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC23.14■■□□□ 1.29
U2af1Q9D883 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
U2af1Q9D883 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
U2af1Q9D883 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
U2af1Q9D883 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
U2af1Q9D883 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
U2af1Q9D883 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC23.13■■□□□ 1.29
U2af1Q9D883 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
U2af1Q9D883 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
U2af1Q9D883 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
U2af1Q9D883 Krtap5-1-202ENSMUST00000188274 742 ntBASIC23.13■■□□□ 1.29
U2af1Q9D883 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
U2af1Q9D883 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC23.13■■□□□ 1.29
U2af1Q9D883 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC23.13■■□□□ 1.29
U2af1Q9D883 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
U2af1Q9D883 Fam167b-201ENSMUST00000052835 913 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
U2af1Q9D883 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
U2af1Q9D883 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC23.13■■□□□ 1.29
U2af1Q9D883 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
U2af1Q9D883 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
U2af1Q9D883 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
U2af1Q9D883 AW011738-201ENSMUST00000105140 1848 ntAPPRIS P1 BASIC23.12■■□□□ 1.29
U2af1Q9D883 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
U2af1Q9D883 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC23.12■■□□□ 1.29
U2af1Q9D883 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
U2af1Q9D883 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC23.12■■□□□ 1.29
U2af1Q9D883 AC135963.1-201ENSMUST00000211640 717 ntBASIC23.12■■□□□ 1.29
U2af1Q9D883 Lysmd2-201ENSMUST00000034702 1189 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
U2af1Q9D883 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
U2af1Q9D883 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
U2af1Q9D883 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC23.12■■□□□ 1.29
U2af1Q9D883 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC23.12■■□□□ 1.29
U2af1Q9D883 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
U2af1Q9D883 Nkd1-201ENSMUST00000034086 3035 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
U2af1Q9D883 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
U2af1Q9D883 Dlk2-202ENSMUST00000166280 1341 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
U2af1Q9D883 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC23.11■■□□□ 1.29
U2af1Q9D883 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
U2af1Q9D883 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC23.11■■□□□ 1.29
U2af1Q9D883 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC23.11■■□□□ 1.29
U2af1Q9D883 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC23.11■■□□□ 1.29
U2af1Q9D883 Gm19554-201ENSMUST00000220934 2076 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
U2af1Q9D883 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC23.11■■□□□ 1.29
U2af1Q9D883 Abhd5-202ENSMUST00000111497 2576 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
U2af1Q9D883 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC23.11■■□□□ 1.29
U2af1Q9D883 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC23.1■■□□□ 1.29
U2af1Q9D883 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC23.1■■□□□ 1.29
U2af1Q9D883 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
U2af1Q9D883 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
U2af1Q9D883 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC23.1■■□□□ 1.29
U2af1Q9D883 Gm30025-201ENSMUST00000218555 728 ntBASIC23.1■■□□□ 1.29
U2af1Q9D883 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
U2af1Q9D883 Gm42939-201ENSMUST00000197514 2205 ntBASIC23.1■■□□□ 1.29
U2af1Q9D883 Il17rb-201ENSMUST00000016110 2061 ntAPPRIS P2 TSL 1 (best) BASIC23.1■■□□□ 1.29
U2af1Q9D883 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC23.09■■□□□ 1.29
U2af1Q9D883 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC23.09■■□□□ 1.29
U2af1Q9D883 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
U2af1Q9D883 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC23.09■■□□□ 1.29
U2af1Q9D883 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC23.09■■□□□ 1.29
U2af1Q9D883 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
U2af1Q9D883 Rps2-ps2-201ENSMUST00000194305 881 ntBASIC23.09■■□□□ 1.29
U2af1Q9D883 Vps37d-202ENSMUST00000076203 1286 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
U2af1Q9D883 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC23.09■■□□□ 1.29
U2af1Q9D883 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC23.09■■□□□ 1.29
U2af1Q9D883 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
U2af1Q9D883 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC23.09■■□□□ 1.29
U2af1Q9D883 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
U2af1Q9D883 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
U2af1Q9D883 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
U2af1Q9D883 Adgrv1-207ENSMUST00000128585 2580 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
U2af1Q9D883 Ndufa10-201ENSMUST00000027478 2020 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
U2af1Q9D883 Gm38027-201ENSMUST00000192315 235 ntBASIC23.08■■□□□ 1.29
U2af1Q9D883 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC23.08■■□□□ 1.29
U2af1Q9D883 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
U2af1Q9D883 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.29
U2af1Q9D883 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
U2af1Q9D883 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
U2af1Q9D883 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.28
U2af1Q9D883 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC23.08■■□□□ 1.28
U2af1Q9D883 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
U2af1Q9D883 Bmt2-201ENSMUST00000045235 4143 ntAPPRIS P2 TSL 1 (best) BASIC23.07■■□□□ 1.28
U2af1Q9D883 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC23.07■■□□□ 1.28
U2af1Q9D883 Proc-201ENSMUST00000171765 1566 ntAPPRIS P1 TSL 5 BASIC23.07■■□□□ 1.28
Retrieved 100 of 76,532 protein–RNA pairs in 17.4 ms