Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Vps28Q9D1C8 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Vps28Q9D1C8 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC18.01■□□□□ 0.47
Vps28Q9D1C8 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Vps28Q9D1C8 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Vps28Q9D1C8 Prkra-201ENSMUST00000002808 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Vps28Q9D1C8 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Vps28Q9D1C8 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Vps28Q9D1C8 Camsap3-206ENSMUST00000207533 2584 ntTSL 1 (best) BASIC18■□□□□ 0.47
Vps28Q9D1C8 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Vps28Q9D1C8 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC18■□□□□ 0.47
Vps28Q9D1C8 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
Vps28Q9D1C8 Nrros-203ENSMUST00000115165 2389 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Vps28Q9D1C8 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC18■□□□□ 0.47
Vps28Q9D1C8 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC18■□□□□ 0.47
Vps28Q9D1C8 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC18■□□□□ 0.47
Vps28Q9D1C8 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Vps28Q9D1C8 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Vps28Q9D1C8 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC18■□□□□ 0.47
Vps28Q9D1C8 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC18■□□□□ 0.47
Vps28Q9D1C8 AC175538.1-201ENSMUST00000225343 1269 ntBASIC18■□□□□ 0.47
Vps28Q9D1C8 Ttpal-202ENSMUST00000109408 1999 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Vps28Q9D1C8 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC18■□□□□ 0.47
Vps28Q9D1C8 Cdc14b-201ENSMUST00000039318 5859 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
Vps28Q9D1C8 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Vps28Q9D1C8 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC18■□□□□ 0.47
Vps28Q9D1C8 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
Vps28Q9D1C8 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
Vps28Q9D1C8 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Vps28Q9D1C8 Efnb2-201ENSMUST00000001319 4793 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Vps28Q9D1C8 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Vps28Q9D1C8 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
Vps28Q9D1C8 Mir6982-201ENSMUST00000184354 68 ntBASIC17.99■□□□□ 0.47
Vps28Q9D1C8 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Vps28Q9D1C8 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC17.99■□□□□ 0.47
Vps28Q9D1C8 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Vps28Q9D1C8 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Vps28Q9D1C8 Abhd5-202ENSMUST00000111497 2576 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Vps28Q9D1C8 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
Vps28Q9D1C8 Il17rc-201ENSMUST00000058300 2302 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Vps28Q9D1C8 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Vps28Q9D1C8 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Vps28Q9D1C8 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Vps28Q9D1C8 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Vps28Q9D1C8 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
Vps28Q9D1C8 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC17.98■□□□□ 0.47
Vps28Q9D1C8 Sirt7-201ENSMUST00000080202 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Vps28Q9D1C8 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Vps28Q9D1C8 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Vps28Q9D1C8 Gm17484-201ENSMUST00000167899 2322 ntTSL 2 BASIC17.98■□□□□ 0.47
Vps28Q9D1C8 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC17.98■□□□□ 0.47
Vps28Q9D1C8 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
Vps28Q9D1C8 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Vps28Q9D1C8 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC17.98■□□□□ 0.47
Vps28Q9D1C8 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Vps28Q9D1C8 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC17.98■□□□□ 0.47
Vps28Q9D1C8 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC17.98■□□□□ 0.47
Vps28Q9D1C8 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Vps28Q9D1C8 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Vps28Q9D1C8 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Vps28Q9D1C8 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Vps28Q9D1C8 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Vps28Q9D1C8 Gm37374-201ENSMUST00000194954 1829 ntBASIC17.98■□□□□ 0.47
Vps28Q9D1C8 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Vps28Q9D1C8 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
Vps28Q9D1C8 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Vps28Q9D1C8 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
Vps28Q9D1C8 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Vps28Q9D1C8 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC17.97■□□□□ 0.47
Vps28Q9D1C8 Gm11643-201ENSMUST00000119578 864 ntBASIC17.97■□□□□ 0.47
Vps28Q9D1C8 Sqstm1-205ENSMUST00000143379 1266 ntTSL 5 BASIC17.97■□□□□ 0.47
Vps28Q9D1C8 AL672049.1-201ENSMUST00000197943 91 ntBASIC17.97■□□□□ 0.47
Vps28Q9D1C8 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Vps28Q9D1C8 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC17.97■□□□□ 0.47
Vps28Q9D1C8 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Vps28Q9D1C8 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC17.97■□□□□ 0.47
Vps28Q9D1C8 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
Vps28Q9D1C8 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Vps28Q9D1C8 Gm5828-201ENSMUST00000071842 1860 ntBASIC17.97■□□□□ 0.47
Vps28Q9D1C8 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Vps28Q9D1C8 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Vps28Q9D1C8 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Vps28Q9D1C8 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Vps28Q9D1C8 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Vps28Q9D1C8 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
Vps28Q9D1C8 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Vps28Q9D1C8 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Vps28Q9D1C8 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Vps28Q9D1C8 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Vps28Q9D1C8 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Vps28Q9D1C8 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Vps28Q9D1C8 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
Vps28Q9D1C8 Gm10418-201ENSMUST00000100943 576 ntBASIC17.96■□□□□ 0.47
Vps28Q9D1C8 Gm1673-203ENSMUST00000114383 511 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Vps28Q9D1C8 Zmynd19-202ENSMUST00000148042 1103 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Vps28Q9D1C8 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
Vps28Q9D1C8 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
Vps28Q9D1C8 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Vps28Q9D1C8 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Vps28Q9D1C8 Ergic3-202ENSMUST00000088650 1349 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 20.1 ms