Protein–RNA interactions for Protein: Q9CR29

Ccdc43, Coiled-coil domain-containing protein 43, mousemouse

Known RBP Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc43Q9CR29 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Ccdc43Q9CR29 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
Ccdc43Q9CR29 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
Ccdc43Q9CR29 Gm44672-201ENSMUST00000206944 1098 ntBASIC19.56■□□□□ 0.72
Ccdc43Q9CR29 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
Ccdc43Q9CR29 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC19.56■□□□□ 0.72
Ccdc43Q9CR29 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Ccdc43Q9CR29 Col18a1-202ENSMUST00000081654 5063 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Ccdc43Q9CR29 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
Ccdc43Q9CR29 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Ccdc43Q9CR29 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Ccdc43Q9CR29 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Ccdc43Q9CR29 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Ccdc43Q9CR29 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Ccdc43Q9CR29 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
Ccdc43Q9CR29 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Ccdc43Q9CR29 Abcb10-201ENSMUST00000075578 4306 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Ccdc43Q9CR29 Urgcp-206ENSMUST00000170116 5528 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
Ccdc43Q9CR29 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC19.55■□□□□ 0.72
Ccdc43Q9CR29 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC19.55■□□□□ 0.72
Ccdc43Q9CR29 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
Ccdc43Q9CR29 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Ccdc43Q9CR29 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC19.55■□□□□ 0.72
Ccdc43Q9CR29 Cnksr2-201ENSMUST00000026750 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Ccdc43Q9CR29 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
Ccdc43Q9CR29 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
Ccdc43Q9CR29 Kctd12-202ENSMUST00000184744 6057 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
Ccdc43Q9CR29 Wnt4-201ENSMUST00000045747 4194 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Ccdc43Q9CR29 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC19.54■□□□□ 0.72
Ccdc43Q9CR29 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Ccdc43Q9CR29 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Ccdc43Q9CR29 Gm44549-201ENSMUST00000208351 577 ntBASIC19.54■□□□□ 0.72
Ccdc43Q9CR29 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
Ccdc43Q9CR29 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Ccdc43Q9CR29 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Ccdc43Q9CR29 Klhl42-201ENSMUST00000036003 6267 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Ccdc43Q9CR29 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Ccdc43Q9CR29 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC19.54■□□□□ 0.72
Ccdc43Q9CR29 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Ccdc43Q9CR29 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Ccdc43Q9CR29 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Ccdc43Q9CR29 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Ccdc43Q9CR29 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC19.53■□□□□ 0.72
Ccdc43Q9CR29 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Ccdc43Q9CR29 Synpo-205ENSMUST00000130044 4970 ntAPPRIS P3 TSL 2 BASIC19.53■□□□□ 0.72
Ccdc43Q9CR29 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Ccdc43Q9CR29 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Ccdc43Q9CR29 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC19.53■□□□□ 0.72
Ccdc43Q9CR29 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Ccdc43Q9CR29 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Ccdc43Q9CR29 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
Ccdc43Q9CR29 Ttbk1-201ENSMUST00000047034 6959 ntAPPRIS P2 TSL 5 BASIC19.53■□□□□ 0.72
Ccdc43Q9CR29 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC19.53■□□□□ 0.72
Ccdc43Q9CR29 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC19.53■□□□□ 0.72
Ccdc43Q9CR29 Mn1-201ENSMUST00000094463 6860 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
Ccdc43Q9CR29 Cask-203ENSMUST00000115436 8260 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
Ccdc43Q9CR29 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Ccdc43Q9CR29 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Ccdc43Q9CR29 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Ccdc43Q9CR29 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Ccdc43Q9CR29 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Ccdc43Q9CR29 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Ccdc43Q9CR29 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Ccdc43Q9CR29 Ell2-201ENSMUST00000001583 4382 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Ccdc43Q9CR29 Gm44544-201ENSMUST00000207052 1844 ntBASIC19.52■□□□□ 0.72
Ccdc43Q9CR29 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Ccdc43Q9CR29 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
Ccdc43Q9CR29 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
Ccdc43Q9CR29 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Ccdc43Q9CR29 Eva1a-201ENSMUST00000042974 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Ccdc43Q9CR29 Kank1-201ENSMUST00000049400 5637 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.71
Ccdc43Q9CR29 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC19.52■□□□□ 0.71
Ccdc43Q9CR29 Nrros-203ENSMUST00000115165 2389 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ccdc43Q9CR29 Nedd4l-202ENSMUST00000163516 8163 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
Ccdc43Q9CR29 Tbx2-201ENSMUST00000000095 3626 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ccdc43Q9CR29 Usp13-202ENSMUST00000108228 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ccdc43Q9CR29 Synpo-201ENSMUST00000097566 5060 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ccdc43Q9CR29 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Ccdc43Q9CR29 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Ccdc43Q9CR29 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC19.51■□□□□ 0.71
Ccdc43Q9CR29 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ccdc43Q9CR29 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ccdc43Q9CR29 Fam109a-201ENSMUST00000056654 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ccdc43Q9CR29 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ccdc43Q9CR29 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ccdc43Q9CR29 Sfrp1-201ENSMUST00000033952 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ccdc43Q9CR29 Rptor-201ENSMUST00000026671 6594 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ccdc43Q9CR29 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ccdc43Q9CR29 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ccdc43Q9CR29 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ccdc43Q9CR29 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ccdc43Q9CR29 Il17rb-201ENSMUST00000016110 2061 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Ccdc43Q9CR29 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Ccdc43Q9CR29 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Ccdc43Q9CR29 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Ccdc43Q9CR29 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC19.5■□□□□ 0.71
Ccdc43Q9CR29 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC19.5■□□□□ 0.71
Ccdc43Q9CR29 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
Ccdc43Q9CR29 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Ccdc43Q9CR29 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC19.5■□□□□ 0.71
Retrieved 100 of 76,532 protein–RNA pairs in 21.1 ms