Protein–RNA interactions for Protein: Q8VI40

Trim60, Tripartite motif-containing protein 60, mousemouse

Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim60Q8VI40 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Trim60Q8VI40 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trim60Q8VI40 Klhl31-201ENSMUST00000057781 6494 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trim60Q8VI40 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Trim60Q8VI40 Cacna1b-204ENSMUST00000102939 9736 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
Trim60Q8VI40 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trim60Q8VI40 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trim60Q8VI40 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Trim60Q8VI40 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trim60Q8VI40 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Trim60Q8VI40 Agfg2-202ENSMUST00000100544 2858 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trim60Q8VI40 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trim60Q8VI40 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trim60Q8VI40 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trim60Q8VI40 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC18.21■□□□□ 0.51
Trim60Q8VI40 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC18.21■□□□□ 0.51
Trim60Q8VI40 Gm6211-202ENSMUST00000167849 925 ntBASIC18.21■□□□□ 0.51
Trim60Q8VI40 Gm18284-201ENSMUST00000172604 624 ntBASIC18.21■□□□□ 0.51
Trim60Q8VI40 Gm29791-202ENSMUST00000207888 369 ntBASIC18.21■□□□□ 0.51
Trim60Q8VI40 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trim60Q8VI40 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
Trim60Q8VI40 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Trim60Q8VI40 Gm44618-201ENSMUST00000208431 2262 ntTSL 3 BASIC18.21■□□□□ 0.51
Trim60Q8VI40 Prpsap1-201ENSMUST00000106391 1841 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trim60Q8VI40 Fam120c-201ENSMUST00000073364 5463 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trim60Q8VI40 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
Trim60Q8VI40 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.5
Trim60Q8VI40 Fam69a-201ENSMUST00000031198 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
Trim60Q8VI40 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
Trim60Q8VI40 Cnn2-201ENSMUST00000004784 2460 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
Trim60Q8VI40 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
Trim60Q8VI40 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim60Q8VI40 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
Trim60Q8VI40 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim60Q8VI40 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim60Q8VI40 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
Trim60Q8VI40 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim60Q8VI40 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Trim60Q8VI40 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC18.2■□□□□ 0.5
Trim60Q8VI40 Gm7291-201ENSMUST00000199147 382 ntBASIC18.2■□□□□ 0.5
Trim60Q8VI40 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim60Q8VI40 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Trim60Q8VI40 Zdhhc16-201ENSMUST00000026154 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim60Q8VI40 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim60Q8VI40 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim60Q8VI40 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Trim60Q8VI40 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
Trim60Q8VI40 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Trim60Q8VI40 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim60Q8VI40 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim60Q8VI40 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
Trim60Q8VI40 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim60Q8VI40 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Trim60Q8VI40 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Trim60Q8VI40 Gm15635-204ENSMUST00000208024 2539 ntBASIC18.19■□□□□ 0.5
Trim60Q8VI40 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim60Q8VI40 Homez-202ENSMUST00000142283 4713 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim60Q8VI40 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim60Q8VI40 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC18.18■□□□□ 0.5
Trim60Q8VI40 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Trim60Q8VI40 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim60Q8VI40 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim60Q8VI40 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Trim60Q8VI40 Prcc-201ENSMUST00000005015 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim60Q8VI40 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Trim60Q8VI40 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim60Q8VI40 Acbd6-201ENSMUST00000035560 5592 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim60Q8VI40 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC18.18■□□□□ 0.5
Trim60Q8VI40 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
Trim60Q8VI40 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim60Q8VI40 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim60Q8VI40 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC18.18■□□□□ 0.5
Trim60Q8VI40 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim60Q8VI40 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim60Q8VI40 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim60Q8VI40 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim60Q8VI40 Ecel1-204ENSMUST00000161002 3033 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim60Q8VI40 AC108858.1-201ENSMUST00000228461 1498 ntBASIC18.18■□□□□ 0.5
Trim60Q8VI40 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim60Q8VI40 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim60Q8VI40 Efcab11-201ENSMUST00000046485 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim60Q8VI40 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim60Q8VI40 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
Trim60Q8VI40 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
Trim60Q8VI40 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
Trim60Q8VI40 Dlgap4-212ENSMUST00000169464 4851 ntTSL 5 BASIC18.17■□□□□ 0.5
Trim60Q8VI40 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC18.17■□□□□ 0.5
Trim60Q8VI40 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim60Q8VI40 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim60Q8VI40 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Trim60Q8VI40 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Trim60Q8VI40 Gm42555-201ENSMUST00000199304 1039 ntBASIC18.17■□□□□ 0.5
Trim60Q8VI40 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC18.17■□□□□ 0.5
Trim60Q8VI40 Zfp783-201ENSMUST00000095946 670 ntBASIC18.17■□□□□ 0.5
Trim60Q8VI40 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim60Q8VI40 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim60Q8VI40 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim60Q8VI40 Ubfd1-201ENSMUST00000033158 4849 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim60Q8VI40 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim60Q8VI40 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 57.7 ms