Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 Iqsec1-202ENSMUST00000101153 8036 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
Ccdc9Q8VC31 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ccdc9Q8VC31 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
Ccdc9Q8VC31 Fam169b-201ENSMUST00000098378 2776 ntTSL 5 BASIC21.18■□□□□ 0.98
Ccdc9Q8VC31 Hsd3b2-201ENSMUST00000107021 1788 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ccdc9Q8VC31 Nox4-202ENSMUST00000068829 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ccdc9Q8VC31 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ccdc9Q8VC31 Mtmr12-201ENSMUST00000038172 6840 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ccdc9Q8VC31 Prdm12-201ENSMUST00000113470 2471 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
Ccdc9Q8VC31 Camk2n1-201ENSMUST00000050918 4444 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ccdc9Q8VC31 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC21.17■□□□□ 0.98
Ccdc9Q8VC31 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ccdc9Q8VC31 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ccdc9Q8VC31 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC21.17■□□□□ 0.98
Ccdc9Q8VC31 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ccdc9Q8VC31 Lrriq3-201ENSMUST00000029833 2652 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ccdc9Q8VC31 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ccdc9Q8VC31 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ccdc9Q8VC31 Picalm-206ENSMUST00000207484 8209 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ccdc9Q8VC31 Trim41-201ENSMUST00000047145 3432 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ccdc9Q8VC31 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC21.16■□□□□ 0.98
Ccdc9Q8VC31 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC21.16■□□□□ 0.98
Ccdc9Q8VC31 Cyp2f2-201ENSMUST00000003100 1866 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ccdc9Q8VC31 Eda-205ENSMUST00000113778 4942 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ccdc9Q8VC31 Eda-207ENSMUST00000113780 4915 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Ccdc9Q8VC31 Eda-208ENSMUST00000113781 4915 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Ccdc9Q8VC31 Eda-209ENSMUST00000113783 4930 ntTSL 5 BASIC21.16■□□□□ 0.98
Ccdc9Q8VC31 Tm7sf2-201ENSMUST00000025713 1471 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ccdc9Q8VC31 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ccdc9Q8VC31 Ier3ip1-201ENSMUST00000026487 1395 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ccdc9Q8VC31 Dusp28-201ENSMUST00000060913 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ccdc9Q8VC31 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Ccdc9Q8VC31 Adgrl1-201ENSMUST00000045393 5643 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
Ccdc9Q8VC31 Bean1-201ENSMUST00000093245 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ccdc9Q8VC31 Fbxl7-201ENSMUST00000059204 4632 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ccdc9Q8VC31 Hbs1l-203ENSMUST00000092674 2625 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Ccdc9Q8VC31 9530068E07Rik-201ENSMUST00000036952 2467 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ccdc9Q8VC31 Dlx1-201ENSMUST00000037119 4111 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ccdc9Q8VC31 Fdft1-204ENSMUST00000224625 3698 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
Ccdc9Q8VC31 Tgfb2-201ENSMUST00000045288 5116 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ccdc9Q8VC31 Tead2-203ENSMUST00000107801 3396 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ccdc9Q8VC31 Tnip2-202ENSMUST00000087737 1987 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ccdc9Q8VC31 Mid1-206ENSMUST00000112107 3194 ntTSL 5 BASIC21.16■□□□□ 0.98
Ccdc9Q8VC31 Man2a1-201ENSMUST00000086723 6991 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ccdc9Q8VC31 Urgcp-206ENSMUST00000170116 5528 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
Ccdc9Q8VC31 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Ccdc9Q8VC31 Ube2i-207ENSMUST00000172868 2755 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Ccdc9Q8VC31 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ccdc9Q8VC31 BC030336-201ENSMUST00000060175 4831 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ccdc9Q8VC31 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Ccdc9Q8VC31 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ccdc9Q8VC31 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Ccdc9Q8VC31 Gdf3-201ENSMUST00000032211 2125 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ccdc9Q8VC31 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ccdc9Q8VC31 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ccdc9Q8VC31 Mapk8ip1-201ENSMUST00000050312 2930 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ccdc9Q8VC31 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ccdc9Q8VC31 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Ccdc9Q8VC31 Ctnna2-205ENSMUST00000161846 4018 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
Ccdc9Q8VC31 Slc29a4-201ENSMUST00000058418 2789 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Ccdc9Q8VC31 Gm19430-201ENSMUST00000193847 2137 ntBASIC21.14■□□□□ 0.98
Ccdc9Q8VC31 Tspyl2-201ENSMUST00000044509 2696 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Ccdc9Q8VC31 Adnp-201ENSMUST00000057793 4917 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.98
Ccdc9Q8VC31 Rbfox2-204ENSMUST00000171751 3558 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
Ccdc9Q8VC31 Tacc1-201ENSMUST00000084030 7788 ntAPPRIS P4 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ccdc9Q8VC31 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
Ccdc9Q8VC31 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ccdc9Q8VC31 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Ccdc9Q8VC31 Gm43530-201ENSMUST00000195920 274 ntBASIC21.14■□□□□ 0.97
Ccdc9Q8VC31 Kcnk15-201ENSMUST00000044798 1199 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ccdc9Q8VC31 Glt28d2-201ENSMUST00000033643 2732 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ccdc9Q8VC31 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC21.14■□□□□ 0.97
Ccdc9Q8VC31 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Ccdc9Q8VC31 Gnb1-202ENSMUST00000105616 3088 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ccdc9Q8VC31 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ccdc9Q8VC31 Psen2-201ENSMUST00000010753 2004 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ccdc9Q8VC31 Kctd15-203ENSMUST00000108070 2409 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ccdc9Q8VC31 Snrk-201ENSMUST00000118886 4811 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ccdc9Q8VC31 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Ccdc9Q8VC31 Fam185a-201ENSMUST00000056045 3027 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ccdc9Q8VC31 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ccdc9Q8VC31 Pigx-211ENSMUST00000189013 982 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
Ccdc9Q8VC31 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ccdc9Q8VC31 Pigx-201ENSMUST00000096109 993 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ccdc9Q8VC31 Cacna1h-202ENSMUST00000159048 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ccdc9Q8VC31 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ccdc9Q8VC31 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ccdc9Q8VC31 Wnt2b-201ENSMUST00000029429 3318 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ccdc9Q8VC31 Sass6-205ENSMUST00000198311 2404 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ccdc9Q8VC31 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ccdc9Q8VC31 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ccdc9Q8VC31 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
Ccdc9Q8VC31 Sox4-201ENSMUST00000067230 4795 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
Ccdc9Q8VC31 Papola-202ENSMUST00000109901 4380 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Ccdc9Q8VC31 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
Ccdc9Q8VC31 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC21.12■□□□□ 0.97
Ccdc9Q8VC31 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Ccdc9Q8VC31 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC21.12■□□□□ 0.97
Ccdc9Q8VC31 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC21.12■□□□□ 0.97
Ccdc9Q8VC31 Nabp1-205ENSMUST00000186684 2677 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 20.2 ms