Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Ushbp1Q8R370 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Ushbp1Q8R370 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Ushbp1Q8R370 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Ushbp1Q8R370 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
Ushbp1Q8R370 Thegl-202ENSMUST00000117880 1641 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Ushbp1Q8R370 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Ushbp1Q8R370 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Ushbp1Q8R370 Nfil3-201ENSMUST00000071065 2026 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Ushbp1Q8R370 Adam15-203ENSMUST00000107446 1686 ntTSL 5 BASIC19.71■□□□□ 0.75
Ushbp1Q8R370 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Ushbp1Q8R370 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC19.71■□□□□ 0.75
Ushbp1Q8R370 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Ushbp1Q8R370 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Ushbp1Q8R370 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Ushbp1Q8R370 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC19.7■□□□□ 0.74
Ushbp1Q8R370 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
Ushbp1Q8R370 Gm20472-201ENSMUST00000174403 1240 ntBASIC19.7■□□□□ 0.74
Ushbp1Q8R370 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC19.7■□□□□ 0.74
Ushbp1Q8R370 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC19.7■□□□□ 0.74
Ushbp1Q8R370 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC19.7■□□□□ 0.74
Ushbp1Q8R370 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Ushbp1Q8R370 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Ushbp1Q8R370 Efcab11-201ENSMUST00000046485 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Ushbp1Q8R370 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Ushbp1Q8R370 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
Ushbp1Q8R370 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Ushbp1Q8R370 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Ushbp1Q8R370 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC19.7■□□□□ 0.74
Ushbp1Q8R370 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Ushbp1Q8R370 B4galt5-201ENSMUST00000109221 4210 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ushbp1Q8R370 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC19.69■□□□□ 0.74
Ushbp1Q8R370 Mff-202ENSMUST00000078332 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ushbp1Q8R370 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ushbp1Q8R370 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ushbp1Q8R370 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ushbp1Q8R370 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ushbp1Q8R370 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ushbp1Q8R370 Gm42900-201ENSMUST00000197184 2167 ntBASIC19.69■□□□□ 0.74
Ushbp1Q8R370 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
Ushbp1Q8R370 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC19.69■□□□□ 0.74
Ushbp1Q8R370 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
Ushbp1Q8R370 AC121577.1-201ENSMUST00000227302 707 ntBASIC19.69■□□□□ 0.74
Ushbp1Q8R370 Gnb5-201ENSMUST00000076889 1188 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Ushbp1Q8R370 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ushbp1Q8R370 4930503L19Rik-201ENSMUST00000067556 2291 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ushbp1Q8R370 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Ushbp1Q8R370 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Ushbp1Q8R370 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Ushbp1Q8R370 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ushbp1Q8R370 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC19.68■□□□□ 0.74
Ushbp1Q8R370 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ushbp1Q8R370 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Ushbp1Q8R370 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ushbp1Q8R370 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ushbp1Q8R370 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ushbp1Q8R370 Camsap3-212ENSMUST00000208240 2572 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Ushbp1Q8R370 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC19.68■□□□□ 0.74
Ushbp1Q8R370 Gm16712-201ENSMUST00000181962 1960 ntTSL 2 BASIC19.68■□□□□ 0.74
Ushbp1Q8R370 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ushbp1Q8R370 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ushbp1Q8R370 AC108858.1-201ENSMUST00000228461 1498 ntBASIC19.67■□□□□ 0.74
Ushbp1Q8R370 Ing1-207ENSMUST00000211007 2241 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Ushbp1Q8R370 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ushbp1Q8R370 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ushbp1Q8R370 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ushbp1Q8R370 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ushbp1Q8R370 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC19.67■□□□□ 0.74
Ushbp1Q8R370 Gm13563-202ENSMUST00000150375 851 ntTSL 3 BASIC19.67■□□□□ 0.74
Ushbp1Q8R370 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC19.67■□□□□ 0.74
Ushbp1Q8R370 AC163280.1-201ENSMUST00000228194 1100 ntBASIC19.67■□□□□ 0.74
Ushbp1Q8R370 Xpa-201ENSMUST00000030013 955 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ushbp1Q8R370 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ushbp1Q8R370 Agbl5-215ENSMUST00000202060 3121 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ushbp1Q8R370 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ushbp1Q8R370 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ushbp1Q8R370 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC19.66■□□□□ 0.74
Ushbp1Q8R370 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
Ushbp1Q8R370 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Ushbp1Q8R370 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ushbp1Q8R370 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
Ushbp1Q8R370 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ushbp1Q8R370 Gm29514-202ENSMUST00000186665 2214 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Ushbp1Q8R370 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ushbp1Q8R370 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ushbp1Q8R370 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Ushbp1Q8R370 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ushbp1Q8R370 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC19.66■□□□□ 0.74
Ushbp1Q8R370 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ushbp1Q8R370 Sept9-201ENSMUST00000019038 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ushbp1Q8R370 Stard3-201ENSMUST00000018311 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ushbp1Q8R370 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ushbp1Q8R370 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ushbp1Q8R370 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Ushbp1Q8R370 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ushbp1Q8R370 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ushbp1Q8R370 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ushbp1Q8R370 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ushbp1Q8R370 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ushbp1Q8R370 9930012K11Rik-201ENSMUST00000058240 1986 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 11.3 ms