Protein–RNA interactions for Protein: Q8CII8

Syne4, Nesprin-4, mousemouse

Predictions only

Length 388 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Syne4Q8CII8 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Syne4Q8CII8 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Syne4Q8CII8 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Syne4Q8CII8 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Syne4Q8CII8 Uqcc2-203ENSMUST00000119227 452 ntTSL 3 BASIC19.92■□□□□ 0.78
Syne4Q8CII8 Gm27357-201ENSMUST00000183754 135 ntBASIC19.92■□□□□ 0.78
Syne4Q8CII8 Nme3-201ENSMUST00000024978 715 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Syne4Q8CII8 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC19.92■□□□□ 0.78
Syne4Q8CII8 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Syne4Q8CII8 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Syne4Q8CII8 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Syne4Q8CII8 Trmo-201ENSMUST00000030015 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Syne4Q8CII8 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC19.91■□□□□ 0.78
Syne4Q8CII8 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Syne4Q8CII8 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Syne4Q8CII8 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Syne4Q8CII8 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Syne4Q8CII8 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Syne4Q8CII8 Gm15890-201ENSMUST00000161024 770 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Syne4Q8CII8 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC19.91■□□□□ 0.78
Syne4Q8CII8 Pdrg1-201ENSMUST00000028972 1273 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Syne4Q8CII8 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
Syne4Q8CII8 Pafah1b3-201ENSMUST00000005583 901 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Syne4Q8CII8 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
Syne4Q8CII8 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Syne4Q8CII8 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Syne4Q8CII8 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Syne4Q8CII8 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Syne4Q8CII8 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC19.91■□□□□ 0.78
Syne4Q8CII8 Nat8f3-202ENSMUST00000168531 1347 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Syne4Q8CII8 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Syne4Q8CII8 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC19.91■□□□□ 0.78
Syne4Q8CII8 Grsf1-201ENSMUST00000078945 2538 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Syne4Q8CII8 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC19.9■□□□□ 0.78
Syne4Q8CII8 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC19.9■□□□□ 0.78
Syne4Q8CII8 Mir770-201ENSMUST00000103252 94 ntBASIC19.9■□□□□ 0.78
Syne4Q8CII8 Ndufaf8-201ENSMUST00000106223 781 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Syne4Q8CII8 Gm24589-201ENSMUST00000116692 94 ntBASIC19.9■□□□□ 0.78
Syne4Q8CII8 Jagn1-202ENSMUST00000204254 1147 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Syne4Q8CII8 BC048679-203ENSMUST00000207871 567 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Syne4Q8CII8 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC19.9■□□□□ 0.78
Syne4Q8CII8 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC19.9■□□□□ 0.78
Syne4Q8CII8 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
Syne4Q8CII8 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Syne4Q8CII8 Prkcz-203ENSMUST00000105624 694 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Syne4Q8CII8 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC19.89■□□□□ 0.77
Syne4Q8CII8 Magix-201ENSMUST00000115695 1342 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Syne4Q8CII8 Gm11860-201ENSMUST00000122346 1010 ntBASIC19.89■□□□□ 0.77
Syne4Q8CII8 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Syne4Q8CII8 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
Syne4Q8CII8 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC19.89■□□□□ 0.77
Syne4Q8CII8 Gm29103-201ENSMUST00000191034 598 ntTSL 5 BASIC19.89■□□□□ 0.77
Syne4Q8CII8 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.77
Syne4Q8CII8 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Syne4Q8CII8 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
Syne4Q8CII8 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Syne4Q8CII8 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Syne4Q8CII8 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Syne4Q8CII8 Klhl8-201ENSMUST00000031254 3193 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Syne4Q8CII8 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Syne4Q8CII8 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
Syne4Q8CII8 Smim1-210ENSMUST00000146054 707 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Syne4Q8CII8 Gm14964-202ENSMUST00000149574 716 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Syne4Q8CII8 Klf13-202ENSMUST00000183817 599 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Syne4Q8CII8 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
Syne4Q8CII8 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Syne4Q8CII8 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Syne4Q8CII8 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Syne4Q8CII8 Zfp800-203ENSMUST00000115321 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Syne4Q8CII8 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Syne4Q8CII8 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Syne4Q8CII8 Pagr1a-202ENSMUST00000200948 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Syne4Q8CII8 Gm42742-205ENSMUST00000202798 1412 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Syne4Q8CII8 Fndc11-202ENSMUST00000108835 1154 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
Syne4Q8CII8 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Syne4Q8CII8 Gm37722-201ENSMUST00000193757 208 ntBASIC19.87■□□□□ 0.77
Syne4Q8CII8 Gm18115-201ENSMUST00000221209 621 ntBASIC19.87■□□□□ 0.77
Syne4Q8CII8 Mzt1-203ENSMUST00000227948 952 ntBASIC19.87■□□□□ 0.77
Syne4Q8CII8 Spr-ps1-201ENSMUST00000089584 605 ntBASIC19.87■□□□□ 0.77
Syne4Q8CII8 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Syne4Q8CII8 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Syne4Q8CII8 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Syne4Q8CII8 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC19.86■□□□□ 0.77
Syne4Q8CII8 Hspb6-201ENSMUST00000044048 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Syne4Q8CII8 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Syne4Q8CII8 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Syne4Q8CII8 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC19.86■□□□□ 0.77
Syne4Q8CII8 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
Syne4Q8CII8 Rpl19-ps10-201ENSMUST00000205555 330 ntBASIC19.86■□□□□ 0.77
Syne4Q8CII8 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC19.86■□□□□ 0.77
Syne4Q8CII8 Ifi27l2b-201ENSMUST00000044687 1093 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Syne4Q8CII8 Odf3b-201ENSMUST00000049968 1040 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Syne4Q8CII8 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Syne4Q8CII8 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
Syne4Q8CII8 Bcl7b-203ENSMUST00000111188 1434 ntAPPRIS ALT1 TSL 5 BASIC19.85■□□□□ 0.77
Syne4Q8CII8 Anxa2-201ENSMUST00000034756 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Syne4Q8CII8 Ngrn-201ENSMUST00000117989 1317 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Syne4Q8CII8 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Syne4Q8CII8 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Syne4Q8CII8 Atp5g1-202ENSMUST00000107684 596 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 30.5 ms