Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Brf1Q8CFK2 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Brf1Q8CFK2 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC21.24■□□□□ 0.99
Brf1Q8CFK2 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Brf1Q8CFK2 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Brf1Q8CFK2 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Brf1Q8CFK2 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Brf1Q8CFK2 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Brf1Q8CFK2 Gm22240-201ENSMUST00000175225 82 ntBASIC21.23■□□□□ 0.99
Brf1Q8CFK2 Nudt22-203ENSMUST00000180765 1073 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
Brf1Q8CFK2 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC21.23■□□□□ 0.99
Brf1Q8CFK2 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Brf1Q8CFK2 Nrros-203ENSMUST00000115165 2389 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Brf1Q8CFK2 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC21.23■□□□□ 0.99
Brf1Q8CFK2 Panx2-203ENSMUST00000162424 3391 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Brf1Q8CFK2 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC21.22■□□□□ 0.99
Brf1Q8CFK2 Mtrf1l-201ENSMUST00000019908 2588 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Brf1Q8CFK2 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Brf1Q8CFK2 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Brf1Q8CFK2 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC21.22■□□□□ 0.99
Brf1Q8CFK2 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Brf1Q8CFK2 Mir8112-201ENSMUST00000184382 131 ntBASIC21.22■□□□□ 0.99
Brf1Q8CFK2 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Brf1Q8CFK2 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Brf1Q8CFK2 Eif1a-202ENSMUST00000168382 1750 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Brf1Q8CFK2 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Brf1Q8CFK2 AW011738-201ENSMUST00000105140 1848 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
Brf1Q8CFK2 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Brf1Q8CFK2 Prkra-201ENSMUST00000002808 1614 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Brf1Q8CFK2 Capg-202ENSMUST00000114071 1400 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Brf1Q8CFK2 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Brf1Q8CFK2 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Brf1Q8CFK2 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC21.21■□□□□ 0.99
Brf1Q8CFK2 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC21.21■□□□□ 0.99
Brf1Q8CFK2 Zdhhc16-201ENSMUST00000026154 1821 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Brf1Q8CFK2 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Brf1Q8CFK2 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC21.21■□□□□ 0.99
Brf1Q8CFK2 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
Brf1Q8CFK2 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
Brf1Q8CFK2 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Brf1Q8CFK2 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Brf1Q8CFK2 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Brf1Q8CFK2 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
Brf1Q8CFK2 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Brf1Q8CFK2 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Brf1Q8CFK2 Sept9-201ENSMUST00000019038 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Brf1Q8CFK2 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC21.2■□□□□ 0.98
Brf1Q8CFK2 Gm21863-201ENSMUST00000179133 336 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
Brf1Q8CFK2 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Brf1Q8CFK2 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Brf1Q8CFK2 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Brf1Q8CFK2 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Brf1Q8CFK2 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC21.2■□□□□ 0.98
Brf1Q8CFK2 C030014I23Rik-201ENSMUST00000080911 1810 ntBASIC21.2■□□□□ 0.98
Brf1Q8CFK2 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Brf1Q8CFK2 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Brf1Q8CFK2 Proc-201ENSMUST00000171765 1566 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
Brf1Q8CFK2 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Brf1Q8CFK2 Gm29514-202ENSMUST00000186665 2214 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Brf1Q8CFK2 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Brf1Q8CFK2 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC21.19■□□□□ 0.98
Brf1Q8CFK2 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Brf1Q8CFK2 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
Brf1Q8CFK2 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Brf1Q8CFK2 Map7-205ENSMUST00000214231 675 ntTSL 3 BASIC21.19■□□□□ 0.98
Brf1Q8CFK2 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
Brf1Q8CFK2 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC21.19■□□□□ 0.98
Brf1Q8CFK2 Wbp1-202ENSMUST00000113936 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Brf1Q8CFK2 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC21.19■□□□□ 0.98
Brf1Q8CFK2 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Brf1Q8CFK2 Cep83-201ENSMUST00000020212 3639 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Brf1Q8CFK2 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Brf1Q8CFK2 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Brf1Q8CFK2 Cfap20-201ENSMUST00000034249 1295 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Brf1Q8CFK2 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Brf1Q8CFK2 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Brf1Q8CFK2 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Brf1Q8CFK2 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Brf1Q8CFK2 Txnl4b-201ENSMUST00000034159 1890 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Brf1Q8CFK2 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Brf1Q8CFK2 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
Brf1Q8CFK2 Gas2-201ENSMUST00000051912 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Brf1Q8CFK2 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Brf1Q8CFK2 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC21.17■□□□□ 0.98
Brf1Q8CFK2 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Brf1Q8CFK2 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC21.17■□□□□ 0.98
Brf1Q8CFK2 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
Brf1Q8CFK2 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Brf1Q8CFK2 Gm43702-201ENSMUST00000198772 2546 ntBASIC21.16■□□□□ 0.98
Brf1Q8CFK2 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
Brf1Q8CFK2 CT010444.2-201ENSMUST00000217877 1629 ntBASIC21.16■□□□□ 0.98
Brf1Q8CFK2 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Brf1Q8CFK2 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Brf1Q8CFK2 AC124581.1-201ENSMUST00000225416 1399 ntBASIC21.16■□□□□ 0.98
Brf1Q8CFK2 Naxd-201ENSMUST00000033901 1359 ntTSL 2 BASIC21.16■□□□□ 0.98
Brf1Q8CFK2 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
Brf1Q8CFK2 Mettl4-ps1-202ENSMUST00000130218 1323 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Brf1Q8CFK2 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Brf1Q8CFK2 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Brf1Q8CFK2 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 19.1 ms