Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
Vps53Q8CCB4 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
Vps53Q8CCB4 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
Vps53Q8CCB4 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
Vps53Q8CCB4 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
Vps53Q8CCB4 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
Vps53Q8CCB4 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Vps53Q8CCB4 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Vps53Q8CCB4 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Vps53Q8CCB4 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
Vps53Q8CCB4 Fst-202ENSMUST00000223640 2612 ntBASIC20.48■□□□□ 0.87
Vps53Q8CCB4 Rarb-207ENSMUST00000225921 2756 ntBASIC20.47■□□□□ 0.87
Vps53Q8CCB4 Cacna1h-202ENSMUST00000159048 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Vps53Q8CCB4 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
Vps53Q8CCB4 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Vps53Q8CCB4 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
Vps53Q8CCB4 Fzd5-201ENSMUST00000063982 6915 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Vps53Q8CCB4 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Vps53Q8CCB4 Mob2-201ENSMUST00000084418 1490 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Vps53Q8CCB4 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Vps53Q8CCB4 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Vps53Q8CCB4 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Vps53Q8CCB4 Stac2-201ENSMUST00000017544 3050 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Vps53Q8CCB4 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Vps53Q8CCB4 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
Vps53Q8CCB4 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Vps53Q8CCB4 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
Vps53Q8CCB4 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Vps53Q8CCB4 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Vps53Q8CCB4 Gm11643-201ENSMUST00000119578 864 ntBASIC20.46■□□□□ 0.87
Vps53Q8CCB4 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Vps53Q8CCB4 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
Vps53Q8CCB4 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Vps53Q8CCB4 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Vps53Q8CCB4 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Vps53Q8CCB4 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Vps53Q8CCB4 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Vps53Q8CCB4 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
Vps53Q8CCB4 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Vps53Q8CCB4 CT010444.2-201ENSMUST00000217877 1629 ntBASIC20.45■□□□□ 0.87
Vps53Q8CCB4 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Vps53Q8CCB4 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
Vps53Q8CCB4 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
Vps53Q8CCB4 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Vps53Q8CCB4 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
Vps53Q8CCB4 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Vps53Q8CCB4 Chic2-201ENSMUST00000075452 9699 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Vps53Q8CCB4 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC20.45■□□□□ 0.86
Vps53Q8CCB4 Gm9484-201ENSMUST00000195892 1159 ntBASIC20.45■□□□□ 0.86
Vps53Q8CCB4 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Vps53Q8CCB4 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Vps53Q8CCB4 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Vps53Q8CCB4 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC20.45■□□□□ 0.86
Vps53Q8CCB4 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Vps53Q8CCB4 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Vps53Q8CCB4 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Vps53Q8CCB4 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Vps53Q8CCB4 Abhd5-202ENSMUST00000111497 2576 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Vps53Q8CCB4 Rassf1-201ENSMUST00000010211 1727 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Vps53Q8CCB4 Tmem145-202ENSMUST00000119703 1781 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
Vps53Q8CCB4 Ankrd63-201ENSMUST00000104937 4861 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
Vps53Q8CCB4 Fam199x-201ENSMUST00000047852 8299 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Vps53Q8CCB4 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC20.44■□□□□ 0.86
Vps53Q8CCB4 AC163280.1-201ENSMUST00000228194 1100 ntBASIC20.44■□□□□ 0.86
Vps53Q8CCB4 Braf-201ENSMUST00000002487 9728 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Vps53Q8CCB4 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Vps53Q8CCB4 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Vps53Q8CCB4 Thsd7a-202ENSMUST00000119581 5678 ntAPPRIS P2 TSL 5 BASIC20.44■□□□□ 0.86
Vps53Q8CCB4 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Vps53Q8CCB4 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Vps53Q8CCB4 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Vps53Q8CCB4 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Vps53Q8CCB4 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Vps53Q8CCB4 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Vps53Q8CCB4 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Vps53Q8CCB4 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Vps53Q8CCB4 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC20.43■□□□□ 0.86
Vps53Q8CCB4 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC20.43■□□□□ 0.86
Vps53Q8CCB4 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Vps53Q8CCB4 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC20.43■□□□□ 0.86
Vps53Q8CCB4 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC20.43■□□□□ 0.86
Vps53Q8CCB4 Gm38345-201ENSMUST00000192635 1748 ntBASIC20.43■□□□□ 0.86
Vps53Q8CCB4 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
Vps53Q8CCB4 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Vps53Q8CCB4 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
Vps53Q8CCB4 Slc30a10-201ENSMUST00000061093 5836 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Vps53Q8CCB4 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Vps53Q8CCB4 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Vps53Q8CCB4 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Vps53Q8CCB4 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Vps53Q8CCB4 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Vps53Q8CCB4 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
Vps53Q8CCB4 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC20.42■□□□□ 0.86
Vps53Q8CCB4 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
Vps53Q8CCB4 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
Vps53Q8CCB4 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Vps53Q8CCB4 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
Vps53Q8CCB4 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Vps53Q8CCB4 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Vps53Q8CCB4 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 18.8 ms