Protein–RNA interactions for Protein: Q8C6K9

Col6a6, Collagen alpha-6(VI) chain, mousemouse

Predictions only

Length 2,265 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a6Q8C6K9 Gm27389-201ENSMUST00000183622 195 ntBASIC15.84■□□□□ 0.13
Col6a6Q8C6K9 Cd70-201ENSMUST00000019633 842 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Col6a6Q8C6K9 Shisa5-218ENSMUST00000200515 1005 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Col6a6Q8C6K9 Gpd1-203ENSMUST00000162194 1515 ntTSL 5 BASIC15.84■□□□□ 0.13
Col6a6Q8C6K9 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Col6a6Q8C6K9 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Col6a6Q8C6K9 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC15.84■□□□□ 0.13
Col6a6Q8C6K9 Tm6sf2-201ENSMUST00000049197 1418 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
Col6a6Q8C6K9 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.13
Col6a6Q8C6K9 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Col6a6Q8C6K9 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
Col6a6Q8C6K9 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Col6a6Q8C6K9 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Col6a6Q8C6K9 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Col6a6Q8C6K9 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Col6a6Q8C6K9 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Col6a6Q8C6K9 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
Col6a6Q8C6K9 Scml4-203ENSMUST00000105495 1033 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Col6a6Q8C6K9 Ifi27l2b-201ENSMUST00000044687 1093 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Col6a6Q8C6K9 Vps37d-202ENSMUST00000076203 1286 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Col6a6Q8C6K9 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
Col6a6Q8C6K9 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Col6a6Q8C6K9 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Col6a6Q8C6K9 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Col6a6Q8C6K9 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC15.82■□□□□ 0.12
Col6a6Q8C6K9 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
Col6a6Q8C6K9 Jmy-201ENSMUST00000065537 8776 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Col6a6Q8C6K9 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC15.82■□□□□ 0.12
Col6a6Q8C6K9 Gm12963-201ENSMUST00000131846 783 ntTSL 5 BASIC15.82■□□□□ 0.12
Col6a6Q8C6K9 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Col6a6Q8C6K9 Gm27459-201ENSMUST00000184860 107 ntBASIC15.82■□□□□ 0.12
Col6a6Q8C6K9 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC15.82■□□□□ 0.12
Col6a6Q8C6K9 Gm34391-201ENSMUST00000203706 907 ntBASIC15.82■□□□□ 0.12
Col6a6Q8C6K9 Jagn1-202ENSMUST00000204254 1147 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Col6a6Q8C6K9 Irak1bp1-201ENSMUST00000034783 1159 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Col6a6Q8C6K9 Eif1a-202ENSMUST00000168382 1750 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Col6a6Q8C6K9 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Col6a6Q8C6K9 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Col6a6Q8C6K9 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Col6a6Q8C6K9 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Col6a6Q8C6K9 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Col6a6Q8C6K9 Fgf20-202ENSMUST00000118639 587 ntTSL 3 BASIC15.82■□□□□ 0.12
Col6a6Q8C6K9 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC15.82■□□□□ 0.12
Col6a6Q8C6K9 Gm3272-201ENSMUST00000181181 1229 ntBASIC15.82■□□□□ 0.12
Col6a6Q8C6K9 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC15.82■□□□□ 0.12
Col6a6Q8C6K9 Gm10566-201ENSMUST00000086739 996 ntBASIC15.82■□□□□ 0.12
Col6a6Q8C6K9 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Col6a6Q8C6K9 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Col6a6Q8C6K9 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC15.81■□□□□ 0.12
Col6a6Q8C6K9 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Col6a6Q8C6K9 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Col6a6Q8C6K9 Gm9194-201ENSMUST00000220749 1447 ntBASIC15.81■□□□□ 0.12
Col6a6Q8C6K9 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Col6a6Q8C6K9 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
Col6a6Q8C6K9 Pyy-201ENSMUST00000017455 555 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
Col6a6Q8C6K9 Otx2os1-206ENSMUST00000228153 787 ntBASIC15.81■□□□□ 0.12
Col6a6Q8C6K9 Socs2-213ENSMUST00000170690 2195 ntAPPRIS P1 TSL 3 BASIC15.81■□□□□ 0.12
Col6a6Q8C6K9 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Col6a6Q8C6K9 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Col6a6Q8C6K9 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Col6a6Q8C6K9 Bcl7b-203ENSMUST00000111188 1434 ntAPPRIS ALT1 TSL 5 BASIC15.81■□□□□ 0.12
Col6a6Q8C6K9 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Col6a6Q8C6K9 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Col6a6Q8C6K9 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Col6a6Q8C6K9 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Col6a6Q8C6K9 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
Col6a6Q8C6K9 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC15.8■□□□□ 0.12
Col6a6Q8C6K9 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC15.8■□□□□ 0.12
Col6a6Q8C6K9 Cgrrf1-204ENSMUST00000140114 419 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Col6a6Q8C6K9 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Col6a6Q8C6K9 Prima1-201ENSMUST00000074416 909 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Col6a6Q8C6K9 Spr-ps1-201ENSMUST00000089584 605 ntBASIC15.8■□□□□ 0.12
Col6a6Q8C6K9 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Col6a6Q8C6K9 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Col6a6Q8C6K9 AC121961.1-201ENSMUST00000218594 1779 ntBASIC15.8■□□□□ 0.12
Col6a6Q8C6K9 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Col6a6Q8C6K9 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Col6a6Q8C6K9 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Col6a6Q8C6K9 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Col6a6Q8C6K9 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
Col6a6Q8C6K9 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Col6a6Q8C6K9 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Col6a6Q8C6K9 Tmsb10-202ENSMUST00000114049 690 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Col6a6Q8C6K9 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC15.79■□□□□ 0.12
Col6a6Q8C6K9 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Col6a6Q8C6K9 BC049762-201ENSMUST00000054226 760 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Col6a6Q8C6K9 Birc2-201ENSMUST00000054878 378 ntBASIC15.79■□□□□ 0.12
Col6a6Q8C6K9 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Col6a6Q8C6K9 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Col6a6Q8C6K9 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
Col6a6Q8C6K9 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
Col6a6Q8C6K9 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Col6a6Q8C6K9 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Col6a6Q8C6K9 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
Col6a6Q8C6K9 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Col6a6Q8C6K9 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Col6a6Q8C6K9 Ube2z-201ENSMUST00000100528 3997 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Col6a6Q8C6K9 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Col6a6Q8C6K9 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Col6a6Q8C6K9 Creld1-201ENSMUST00000032422 2306 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Retrieved 100 of 76,532 protein–RNA pairs in 28.9 ms