Protein–RNA interactions for Protein: Q8C0D0

Trub1, Probable tRNA pseudouridine synthase 1, mousemouse

Known RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trub1Q8C0D0 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Trub1Q8C0D0 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
Trub1Q8C0D0 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC18.15■□□□□ 0.5
Trub1Q8C0D0 Tmem192-201ENSMUST00000026595 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trub1Q8C0D0 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trub1Q8C0D0 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trub1Q8C0D0 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trub1Q8C0D0 Eif4enif1-203ENSMUST00000110049 3614 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trub1Q8C0D0 Gas2-201ENSMUST00000051912 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trub1Q8C0D0 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC18.15■□□□□ 0.5
Trub1Q8C0D0 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trub1Q8C0D0 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trub1Q8C0D0 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trub1Q8C0D0 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trub1Q8C0D0 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Trub1Q8C0D0 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC18.14■□□□□ 0.49
Trub1Q8C0D0 Adsl-204ENSMUST00000164806 1595 ntTSL 5 BASIC18.14■□□□□ 0.49
Trub1Q8C0D0 Gm43272-201ENSMUST00000200599 1584 ntBASIC18.14■□□□□ 0.49
Trub1Q8C0D0 Prss12-201ENSMUST00000029603 2602 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trub1Q8C0D0 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
Trub1Q8C0D0 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC18.14■□□□□ 0.49
Trub1Q8C0D0 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
Trub1Q8C0D0 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Trub1Q8C0D0 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
Trub1Q8C0D0 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC18.14■□□□□ 0.49
Trub1Q8C0D0 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
Trub1Q8C0D0 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC18.14■□□□□ 0.49
Trub1Q8C0D0 Gm18025-201ENSMUST00000221733 862 ntBASIC18.14■□□□□ 0.49
Trub1Q8C0D0 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trub1Q8C0D0 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trub1Q8C0D0 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trub1Q8C0D0 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trub1Q8C0D0 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trub1Q8C0D0 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trub1Q8C0D0 AW011738-201ENSMUST00000105140 1848 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
Trub1Q8C0D0 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC18.14■□□□□ 0.49
Trub1Q8C0D0 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trub1Q8C0D0 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trub1Q8C0D0 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trub1Q8C0D0 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trub1Q8C0D0 Senp2-201ENSMUST00000023561 4499 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trub1Q8C0D0 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC18.13■□□□□ 0.49
Trub1Q8C0D0 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trub1Q8C0D0 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC18.13■□□□□ 0.49
Trub1Q8C0D0 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC18.13■□□□□ 0.49
Trub1Q8C0D0 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC18.13■□□□□ 0.49
Trub1Q8C0D0 Gm6576-201ENSMUST00000169678 883 ntBASIC18.13■□□□□ 0.49
Trub1Q8C0D0 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC18.13■□□□□ 0.49
Trub1Q8C0D0 Gm18666-201ENSMUST00000190039 958 ntBASIC18.13■□□□□ 0.49
Trub1Q8C0D0 Tmem14c-201ENSMUST00000021790 914 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trub1Q8C0D0 AC166341.7-201ENSMUST00000221698 126 ntBASIC18.13■□□□□ 0.49
Trub1Q8C0D0 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trub1Q8C0D0 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Trub1Q8C0D0 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trub1Q8C0D0 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC18.13■□□□□ 0.49
Trub1Q8C0D0 Proc-201ENSMUST00000171765 1566 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Trub1Q8C0D0 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trub1Q8C0D0 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Trub1Q8C0D0 Txnl4b-201ENSMUST00000034159 1890 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trub1Q8C0D0 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trub1Q8C0D0 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Trub1Q8C0D0 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trub1Q8C0D0 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
Trub1Q8C0D0 Gm42545-201ENSMUST00000202755 922 ntBASIC18.12■□□□□ 0.49
Trub1Q8C0D0 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Trub1Q8C0D0 Gm44878-201ENSMUST00000205812 1295 ntBASIC18.12■□□□□ 0.49
Trub1Q8C0D0 AC135637.1-201ENSMUST00000227750 365 ntBASIC18.12■□□□□ 0.49
Trub1Q8C0D0 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC18.12■□□□□ 0.49
Trub1Q8C0D0 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trub1Q8C0D0 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Trub1Q8C0D0 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trub1Q8C0D0 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trub1Q8C0D0 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC18.12■□□□□ 0.49
Trub1Q8C0D0 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trub1Q8C0D0 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trub1Q8C0D0 4430402I18Rik-205ENSMUST00000162110 1559 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Trub1Q8C0D0 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trub1Q8C0D0 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trub1Q8C0D0 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trub1Q8C0D0 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Trub1Q8C0D0 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trub1Q8C0D0 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trub1Q8C0D0 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trub1Q8C0D0 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
Trub1Q8C0D0 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trub1Q8C0D0 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Trub1Q8C0D0 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC18.11■□□□□ 0.49
Trub1Q8C0D0 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC18.11■□□□□ 0.49
Trub1Q8C0D0 Thap3-201ENSMUST00000036680 1124 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trub1Q8C0D0 Nrn1-203ENSMUST00000223611 1443 ntBASIC18.11■□□□□ 0.49
Trub1Q8C0D0 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trub1Q8C0D0 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
Trub1Q8C0D0 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trub1Q8C0D0 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
Trub1Q8C0D0 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trub1Q8C0D0 Gnao1-201ENSMUST00000034198 2948 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trub1Q8C0D0 AC125311.2-201ENSMUST00000227477 1940 ntBASIC18.1■□□□□ 0.49
Trub1Q8C0D0 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trub1Q8C0D0 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trub1Q8C0D0 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 33.8 ms