Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.47
Usp40Q8BWR4 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
Usp40Q8BWR4 Gm3488-202ENSMUST00000181562 1945 ntAPPRIS P5 TSL 5 BASIC24.2■■□□□ 1.46
Usp40Q8BWR4 Fbxo9-203ENSMUST00000159099 1201 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
Usp40Q8BWR4 Efcab11-207ENSMUST00000223114 1122 ntAPPRIS P1 TSL 5 BASIC24.2■■□□□ 1.46
Usp40Q8BWR4 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
Usp40Q8BWR4 Gm7367-201ENSMUST00000057611 492 ntBASIC24.2■■□□□ 1.46
Usp40Q8BWR4 Fgf9-202ENSMUST00000074654 1198 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
Usp40Q8BWR4 Fam92a-201ENSMUST00000087052 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC24.2■■□□□ 1.46
Usp40Q8BWR4 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
Usp40Q8BWR4 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC24.2■■□□□ 1.46
Usp40Q8BWR4 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC24.2■■□□□ 1.46
Usp40Q8BWR4 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
Usp40Q8BWR4 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
Usp40Q8BWR4 Gm7854-202ENSMUST00000187409 1433 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
Usp40Q8BWR4 Mmp23-201ENSMUST00000030937 1434 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
Usp40Q8BWR4 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
Usp40Q8BWR4 Prr3-209ENSMUST00000174849 581 ntTSL 2 BASIC24.19■■□□□ 1.46
Usp40Q8BWR4 4930544D05Rik-204ENSMUST00000180052 755 ntAPPRIS ALT2 TSL 5 BASIC24.19■■□□□ 1.46
Usp40Q8BWR4 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
Usp40Q8BWR4 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
Usp40Q8BWR4 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC24.19■■□□□ 1.46
Usp40Q8BWR4 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
Usp40Q8BWR4 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC24.19■■□□□ 1.46
Usp40Q8BWR4 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC24.19■■□□□ 1.46
Usp40Q8BWR4 AC123834.2-201ENSMUST00000224038 2340 ntBASIC24.18■■□□□ 1.46
Usp40Q8BWR4 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Usp40Q8BWR4 Proca1-203ENSMUST00000108317 1359 ntAPPRIS ALT2 TSL 5 BASIC24.18■■□□□ 1.46
Usp40Q8BWR4 Praf2-201ENSMUST00000033489 1339 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Usp40Q8BWR4 Eif4e2-205ENSMUST00000113232 1125 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
Usp40Q8BWR4 Gm13474-201ENSMUST00000122466 815 ntBASIC24.18■■□□□ 1.46
Usp40Q8BWR4 Asnsd1-202ENSMUST00000123519 983 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
Usp40Q8BWR4 AC120002.2-201ENSMUST00000220205 773 ntBASIC24.18■■□□□ 1.46
Usp40Q8BWR4 Hoxa6-201ENSMUST00000062829 874 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Usp40Q8BWR4 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Usp40Q8BWR4 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC24.18■■□□□ 1.46
Usp40Q8BWR4 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Usp40Q8BWR4 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC24.18■■□□□ 1.46
Usp40Q8BWR4 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Usp40Q8BWR4 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
Usp40Q8BWR4 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC24.17■■□□□ 1.46
Usp40Q8BWR4 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Usp40Q8BWR4 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Usp40Q8BWR4 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC24.17■■□□□ 1.46
Usp40Q8BWR4 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC24.17■■□□□ 1.46
Usp40Q8BWR4 Ube2h-202ENSMUST00000102993 4657 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Usp40Q8BWR4 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC24.17■■□□□ 1.46
Usp40Q8BWR4 Zfp689-202ENSMUST00000106299 1417 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
Usp40Q8BWR4 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC24.17■■□□□ 1.46
Usp40Q8BWR4 Nagk-203ENSMUST00000113851 1323 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
Usp40Q8BWR4 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
Usp40Q8BWR4 Cdc34-202ENSMUST00000166603 1078 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Usp40Q8BWR4 Hint1-201ENSMUST00000020504 636 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Usp40Q8BWR4 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC24.16■■□□□ 1.46
Usp40Q8BWR4 Man1a-203ENSMUST00000105470 2847 ntAPPRIS P1 TSL 5 BASIC24.16■■□□□ 1.46
Usp40Q8BWR4 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
Usp40Q8BWR4 Gm7609-201ENSMUST00000113402 1538 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
Usp40Q8BWR4 Spsb2-203ENSMUST00000112473 1322 ntBASIC24.15■■□□□ 1.46
Usp40Q8BWR4 Auh-201ENSMUST00000021913 1320 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Usp40Q8BWR4 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Usp40Q8BWR4 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
Usp40Q8BWR4 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC24.15■■□□□ 1.46
Usp40Q8BWR4 Hist1h2bj-201ENSMUST00000110452 463 ntAPPRIS P1 BASIC24.15■■□□□ 1.46
Usp40Q8BWR4 Hist1h2bp-202ENSMUST00000110473 621 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
Usp40Q8BWR4 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
Usp40Q8BWR4 Hist1h2bm-201ENSMUST00000224651 524 ntAPPRIS P1 BASIC24.15■■□□□ 1.46
Usp40Q8BWR4 Prss27-201ENSMUST00000059482 1253 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Usp40Q8BWR4 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC24.15■■□□□ 1.46
Usp40Q8BWR4 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC24.15■■□□□ 1.46
Usp40Q8BWR4 Mir142hg-201ENSMUST00000123700 269 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
Usp40Q8BWR4 Mir8112-201ENSMUST00000184382 131 ntBASIC24.14■■□□□ 1.45
Usp40Q8BWR4 Ttc32-203ENSMUST00000219488 768 ntTSL 3 BASIC24.14■■□□□ 1.45
Usp40Q8BWR4 Tsr3-201ENSMUST00000063574 1192 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
Usp40Q8BWR4 Rplp2-201ENSMUST00000084434 964 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
Usp40Q8BWR4 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
Usp40Q8BWR4 Gm10616-201ENSMUST00000205285 2127 ntBASIC24.14■■□□□ 1.45
Usp40Q8BWR4 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
Usp40Q8BWR4 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
Usp40Q8BWR4 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC24.14■■□□□ 1.45
Usp40Q8BWR4 Prcc-201ENSMUST00000005015 2099 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
Usp40Q8BWR4 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
Usp40Q8BWR4 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC24.13■■□□□ 1.45
Usp40Q8BWR4 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
Usp40Q8BWR4 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC24.13■■□□□ 1.45
Usp40Q8BWR4 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC24.13■■□□□ 1.45
Usp40Q8BWR4 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC24.13■■□□□ 1.45
Usp40Q8BWR4 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
Usp40Q8BWR4 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
Usp40Q8BWR4 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC24.13■■□□□ 1.45
Usp40Q8BWR4 Tekt5-202ENSMUST00000115831 1277 ntAPPRIS P3 TSL 1 (best) BASIC24.13■■□□□ 1.45
Usp40Q8BWR4 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
Usp40Q8BWR4 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC24.13■■□□□ 1.45
Usp40Q8BWR4 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC24.13■■□□□ 1.45
Usp40Q8BWR4 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
Usp40Q8BWR4 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
Usp40Q8BWR4 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC24.13■■□□□ 1.45
Usp40Q8BWR4 Hunk-201ENSMUST00000065856 5009 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
Usp40Q8BWR4 Gtf3a-204ENSMUST00000146511 1298 ntAPPRIS P5 TSL 1 (best) BASIC24.12■■□□□ 1.45
Usp40Q8BWR4 Gm17661-201ENSMUST00000170317 270 ntBASIC24.12■■□□□ 1.45
Usp40Q8BWR4 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC24.12■■□□□ 1.45
Retrieved 100 of 76,532 protein–RNA pairs in 18.3 ms