Protein–RNA interactions for Protein: Q8BTF7

Lig4, DNA ligase 4, mousemouse

Predictions only

Length 911 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig4Q8BTF7 Shroom3-211ENSMUST00000225438 5742 ntBASIC18.63■□□□□ 0.57
Lig4Q8BTF7 Gm10830-201ENSMUST00000186379 636 ntTSL 5 BASIC18.63■□□□□ 0.57
Lig4Q8BTF7 Ntpcr-201ENSMUST00000034313 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Lig4Q8BTF7 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Lig4Q8BTF7 Fam167b-201ENSMUST00000052835 913 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Lig4Q8BTF7 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Lig4Q8BTF7 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Lig4Q8BTF7 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Lig4Q8BTF7 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Lig4Q8BTF7 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
Lig4Q8BTF7 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Lig4Q8BTF7 Gm45141-201ENSMUST00000206502 1888 ntBASIC18.63■□□□□ 0.57
Lig4Q8BTF7 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Lig4Q8BTF7 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC18.62■□□□□ 0.57
Lig4Q8BTF7 Mpig6b-201ENSMUST00000097337 2252 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Lig4Q8BTF7 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Lig4Q8BTF7 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Lig4Q8BTF7 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Lig4Q8BTF7 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Lig4Q8BTF7 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Lig4Q8BTF7 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Lig4Q8BTF7 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC18.62■□□□□ 0.57
Lig4Q8BTF7 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC18.62■□□□□ 0.57
Lig4Q8BTF7 Odf3b-204ENSMUST00000227834 930 ntBASIC18.62■□□□□ 0.57
Lig4Q8BTF7 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Lig4Q8BTF7 Guca1a-201ENSMUST00000059348 871 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Lig4Q8BTF7 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Lig4Q8BTF7 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Lig4Q8BTF7 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Lig4Q8BTF7 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Lig4Q8BTF7 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Lig4Q8BTF7 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Lig4Q8BTF7 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Lig4Q8BTF7 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Lig4Q8BTF7 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Lig4Q8BTF7 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Lig4Q8BTF7 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
Lig4Q8BTF7 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC18.61■□□□□ 0.57
Lig4Q8BTF7 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC18.61■□□□□ 0.57
Lig4Q8BTF7 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
Lig4Q8BTF7 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Lig4Q8BTF7 Gm28914-201ENSMUST00000188115 667 ntTSL 2 BASIC18.61■□□□□ 0.57
Lig4Q8BTF7 Gm21814-202ENSMUST00000203277 873 ntBASIC18.61■□□□□ 0.57
Lig4Q8BTF7 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC18.61■□□□□ 0.57
Lig4Q8BTF7 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC18.61■□□□□ 0.57
Lig4Q8BTF7 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Lig4Q8BTF7 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Lig4Q8BTF7 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Lig4Q8BTF7 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
Lig4Q8BTF7 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Lig4Q8BTF7 Chst8-203ENSMUST00000154629 2079 ntTSL 5 BASIC18.61■□□□□ 0.57
Lig4Q8BTF7 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
Lig4Q8BTF7 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Lig4Q8BTF7 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Lig4Q8BTF7 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Lig4Q8BTF7 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Lig4Q8BTF7 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Lig4Q8BTF7 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Lig4Q8BTF7 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Lig4Q8BTF7 Mettl4-ps1-202ENSMUST00000130218 1323 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Lig4Q8BTF7 Atf7ip2-204ENSMUST00000119023 1048 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Lig4Q8BTF7 Josd2-206ENSMUST00000121922 684 ntTSL 5 BASIC18.6■□□□□ 0.57
Lig4Q8BTF7 5430402O13Rik-201ENSMUST00000126537 869 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Lig4Q8BTF7 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC18.6■□□□□ 0.57
Lig4Q8BTF7 Gm20472-201ENSMUST00000174403 1240 ntBASIC18.6■□□□□ 0.57
Lig4Q8BTF7 Gm42738-201ENSMUST00000201813 439 ntTSL 3 BASIC18.6■□□□□ 0.57
Lig4Q8BTF7 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
Lig4Q8BTF7 Otx2os1-204ENSMUST00000227221 751 ntBASIC18.6■□□□□ 0.57
Lig4Q8BTF7 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Lig4Q8BTF7 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Lig4Q8BTF7 Idnk-204ENSMUST00000226010 1898 ntBASIC18.6■□□□□ 0.57
Lig4Q8BTF7 F8a-201ENSMUST00000105111 2505 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
Lig4Q8BTF7 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Lig4Q8BTF7 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Lig4Q8BTF7 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Lig4Q8BTF7 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Lig4Q8BTF7 H2-Q7-202ENSMUST00000076256 1523 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
Lig4Q8BTF7 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Lig4Q8BTF7 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Lig4Q8BTF7 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Lig4Q8BTF7 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Lig4Q8BTF7 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Lig4Q8BTF7 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Lig4Q8BTF7 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Lig4Q8BTF7 Gm12085-201ENSMUST00000119263 940 ntBASIC18.59■□□□□ 0.57
Lig4Q8BTF7 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Lig4Q8BTF7 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Lig4Q8BTF7 Mir7071-201ENSMUST00000184847 69 ntBASIC18.59■□□□□ 0.57
Lig4Q8BTF7 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC18.59■□□□□ 0.57
Lig4Q8BTF7 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC18.59■□□□□ 0.57
Lig4Q8BTF7 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Lig4Q8BTF7 Tmf1-201ENSMUST00000095664 5732 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Lig4Q8BTF7 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Lig4Q8BTF7 Eva1c-202ENSMUST00000099543 1554 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Lig4Q8BTF7 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Lig4Q8BTF7 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
Lig4Q8BTF7 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Lig4Q8BTF7 Prmt3-201ENSMUST00000032715 2507 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Lig4Q8BTF7 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Lig4Q8BTF7 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 62.3 ms