Protein–RNA interactions for Protein: Q6PAV2

Herc4, Probable E3 ubiquitin-protein ligase HERC4, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Herc4Q6PAV2 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Herc4Q6PAV2 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
Herc4Q6PAV2 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
Herc4Q6PAV2 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Herc4Q6PAV2 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Herc4Q6PAV2 Rasl10b-202ENSMUST00000108140 3156 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
Herc4Q6PAV2 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Herc4Q6PAV2 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Herc4Q6PAV2 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC19.44■□□□□ 0.7
Herc4Q6PAV2 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
Herc4Q6PAV2 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Herc4Q6PAV2 Car2-201ENSMUST00000029078 1788 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Herc4Q6PAV2 Vhl-201ENSMUST00000035673 2792 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Herc4Q6PAV2 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
Herc4Q6PAV2 Cnn2-201ENSMUST00000004784 2460 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Herc4Q6PAV2 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC19.44■□□□□ 0.7
Herc4Q6PAV2 Gm5643-201ENSMUST00000117081 966 ntBASIC19.44■□□□□ 0.7
Herc4Q6PAV2 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Herc4Q6PAV2 Gm20760-201ENSMUST00000179197 648 ntBASIC19.44■□□□□ 0.7
Herc4Q6PAV2 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC19.44■□□□□ 0.7
Herc4Q6PAV2 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Herc4Q6PAV2 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Herc4Q6PAV2 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Herc4Q6PAV2 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Herc4Q6PAV2 Vkorc1l1-203ENSMUST00000201855 4809 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Herc4Q6PAV2 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC19.43■□□□□ 0.7
Herc4Q6PAV2 Adam15-203ENSMUST00000107446 1686 ntTSL 5 BASIC19.43■□□□□ 0.7
Herc4Q6PAV2 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Herc4Q6PAV2 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
Herc4Q6PAV2 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Herc4Q6PAV2 Meox1-201ENSMUST00000057054 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Herc4Q6PAV2 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Herc4Q6PAV2 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
Herc4Q6PAV2 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC19.43■□□□□ 0.7
Herc4Q6PAV2 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
Herc4Q6PAV2 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Herc4Q6PAV2 Fam171a1-204ENSMUST00000115099 4149 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
Herc4Q6PAV2 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC19.43■□□□□ 0.7
Herc4Q6PAV2 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Herc4Q6PAV2 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
Herc4Q6PAV2 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Herc4Q6PAV2 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Herc4Q6PAV2 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Herc4Q6PAV2 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Herc4Q6PAV2 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
Herc4Q6PAV2 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Herc4Q6PAV2 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Herc4Q6PAV2 Cyth2-201ENSMUST00000056820 2527 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Herc4Q6PAV2 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
Herc4Q6PAV2 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Herc4Q6PAV2 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Herc4Q6PAV2 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC19.42■□□□□ 0.7
Herc4Q6PAV2 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Herc4Q6PAV2 Best2-203ENSMUST00000209421 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Herc4Q6PAV2 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC19.42■□□□□ 0.7
Herc4Q6PAV2 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC19.42■□□□□ 0.7
Herc4Q6PAV2 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Herc4Q6PAV2 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Herc4Q6PAV2 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Herc4Q6PAV2 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC19.42■□□□□ 0.7
Herc4Q6PAV2 Gm42545-201ENSMUST00000202755 922 ntBASIC19.42■□□□□ 0.7
Herc4Q6PAV2 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC19.42■□□□□ 0.7
Herc4Q6PAV2 Gm18025-201ENSMUST00000221733 862 ntBASIC19.42■□□□□ 0.7
Herc4Q6PAV2 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Herc4Q6PAV2 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
Herc4Q6PAV2 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
Herc4Q6PAV2 Mpig6b-201ENSMUST00000097337 2252 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Herc4Q6PAV2 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Herc4Q6PAV2 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC19.41■□□□□ 0.7
Herc4Q6PAV2 Gm13401-201ENSMUST00000117074 291 ntBASIC19.41■□□□□ 0.7
Herc4Q6PAV2 Gm11643-201ENSMUST00000119578 864 ntBASIC19.41■□□□□ 0.7
Herc4Q6PAV2 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Herc4Q6PAV2 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC19.41■□□□□ 0.7
Herc4Q6PAV2 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Herc4Q6PAV2 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Herc4Q6PAV2 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Herc4Q6PAV2 Usp13-202ENSMUST00000108228 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Herc4Q6PAV2 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Herc4Q6PAV2 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Herc4Q6PAV2 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC19.4■□□□□ 0.7
Herc4Q6PAV2 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Herc4Q6PAV2 Stmn1-201ENSMUST00000030636 1060 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Herc4Q6PAV2 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Herc4Q6PAV2 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
Herc4Q6PAV2 Nfil3-201ENSMUST00000071065 2026 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Herc4Q6PAV2 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Herc4Q6PAV2 Raver2-201ENSMUST00000038463 4045 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Herc4Q6PAV2 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.7
Herc4Q6PAV2 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Herc4Q6PAV2 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.7
Herc4Q6PAV2 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC19.39■□□□□ 0.7
Herc4Q6PAV2 Fam69a-201ENSMUST00000031198 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Herc4Q6PAV2 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Herc4Q6PAV2 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC19.39■□□□□ 0.69
Herc4Q6PAV2 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC19.39■□□□□ 0.69
Herc4Q6PAV2 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Herc4Q6PAV2 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC19.39■□□□□ 0.69
Herc4Q6PAV2 AC166341.7-201ENSMUST00000221698 126 ntBASIC19.39■□□□□ 0.69
Herc4Q6PAV2 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC19.39■□□□□ 0.69
Herc4Q6PAV2 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 13.1 ms