Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Col11a1Q61245 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Col11a1Q61245 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Col11a1Q61245 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Col11a1Q61245 Gm44618-201ENSMUST00000208431 2262 ntTSL 3 BASIC19.78■□□□□ 0.76
Col11a1Q61245 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Col11a1Q61245 Tnnt1-203ENSMUST00000108587 1059 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Col11a1Q61245 Edf1-201ENSMUST00000015236 722 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Col11a1Q61245 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
Col11a1Q61245 Serf2-201ENSMUST00000099475 525 ntTSL 2 BASIC19.78■□□□□ 0.76
Col11a1Q61245 Gm26660-201ENSMUST00000181582 2543 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Col11a1Q61245 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Col11a1Q61245 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Col11a1Q61245 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Col11a1Q61245 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
Col11a1Q61245 Rad23a-202ENSMUST00000109761 1842 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.75
Col11a1Q61245 Krt15-201ENSMUST00000107411 1700 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
Col11a1Q61245 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC19.77■□□□□ 0.75
Col11a1Q61245 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
Col11a1Q61245 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.75
Col11a1Q61245 Ctsg-201ENSMUST00000015583 1002 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col11a1Q61245 Npw-202ENSMUST00000213213 531 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col11a1Q61245 Ptcra-201ENSMUST00000041012 1283 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col11a1Q61245 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col11a1Q61245 Sgta-201ENSMUST00000005067 1969 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col11a1Q61245 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col11a1Q61245 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col11a1Q61245 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
Col11a1Q61245 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC19.76■□□□□ 0.75
Col11a1Q61245 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Col11a1Q61245 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Col11a1Q61245 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col11a1Q61245 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC19.76■□□□□ 0.75
Col11a1Q61245 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC19.76■□□□□ 0.75
Col11a1Q61245 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col11a1Q61245 Nrn1l-202ENSMUST00000118920 603 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col11a1Q61245 Arl5b-206ENSMUST00000193836 481 ntTSL 2 BASIC19.76■□□□□ 0.75
Col11a1Q61245 AC132104.2-201ENSMUST00000215011 266 ntBASIC19.76■□□□□ 0.75
Col11a1Q61245 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Col11a1Q61245 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC19.76■□□□□ 0.75
Col11a1Q61245 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC19.76■□□□□ 0.75
Col11a1Q61245 Zfp747-202ENSMUST00000205832 618 ntTSL 3 BASIC19.75■□□□□ 0.75
Col11a1Q61245 AC122351.1-201ENSMUST00000220467 126 ntBASIC19.75■□□□□ 0.75
Col11a1Q61245 Ppp1r27-201ENSMUST00000026121 771 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Col11a1Q61245 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Col11a1Q61245 Cenpw-201ENSMUST00000099985 1532 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Col11a1Q61245 AW011738-201ENSMUST00000105140 1848 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
Col11a1Q61245 Erich2-201ENSMUST00000100041 1749 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Col11a1Q61245 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC19.74■□□□□ 0.75
Col11a1Q61245 Gm18206-201ENSMUST00000207027 926 ntBASIC19.74■□□□□ 0.75
Col11a1Q61245 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC19.74■□□□□ 0.75
Col11a1Q61245 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Col11a1Q61245 Gtf2h4-201ENSMUST00000001565 1679 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Col11a1Q61245 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
Col11a1Q61245 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC19.74■□□□□ 0.75
Col11a1Q61245 Gm43545-201ENSMUST00000196765 2779 ntBASIC19.74■□□□□ 0.75
Col11a1Q61245 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC19.74■□□□□ 0.75
Col11a1Q61245 Mrps18c-203ENSMUST00000112901 820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Col11a1Q61245 Gm11452-201ENSMUST00000122376 690 ntBASIC19.74■□□□□ 0.75
Col11a1Q61245 Gm2651-201ENSMUST00000203560 838 ntBASIC19.74■□□□□ 0.75
Col11a1Q61245 Pard6a-204ENSMUST00000212352 1234 ntTSL 2 BASIC19.74■□□□□ 0.75
Col11a1Q61245 Nme3-201ENSMUST00000024978 715 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Col11a1Q61245 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
Col11a1Q61245 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
Col11a1Q61245 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Col11a1Q61245 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Col11a1Q61245 Gm12895-201ENSMUST00000122214 226 ntBASIC19.73■□□□□ 0.75
Col11a1Q61245 Dgcr6-208ENSMUST00000153123 920 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Col11a1Q61245 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Col11a1Q61245 Tmem255b-201ENSMUST00000167071 1138 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Col11a1Q61245 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Col11a1Q61245 Sftpb-201ENSMUST00000070437 1131 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
Col11a1Q61245 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
Col11a1Q61245 Rabgap1l-201ENSMUST00000028049 2748 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Col11a1Q61245 Abcg5-202ENSMUST00000163375 1613 ntTSL 5 BASIC19.72■□□□□ 0.75
Col11a1Q61245 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Col11a1Q61245 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC19.72■□□□□ 0.75
Col11a1Q61245 Gm40457-201ENSMUST00000205319 1174 ntTSL 5 BASIC19.72■□□□□ 0.75
Col11a1Q61245 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Col11a1Q61245 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Col11a1Q61245 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
Col11a1Q61245 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Col11a1Q61245 1600014C10Rik-209ENSMUST00000179992 568 ntTSL 3 BASIC19.72■□□□□ 0.75
Col11a1Q61245 Gm38119-201ENSMUST00000192027 755 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
Col11a1Q61245 Cebpzos-201ENSMUST00000063817 753 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
Col11a1Q61245 Cd302-202ENSMUST00000074606 1354 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col11a1Q61245 Isyna1-204ENSMUST00000210005 1914 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
Col11a1Q61245 Arfip1-202ENSMUST00000107687 1714 ntTSL 5 BASIC19.71■□□□□ 0.75
Col11a1Q61245 BC021767-201ENSMUST00000126387 1716 ntBASIC19.71■□□□□ 0.75
Col11a1Q61245 Gm37374-201ENSMUST00000194954 1829 ntBASIC19.71■□□□□ 0.75
Col11a1Q61245 Pih1d1-202ENSMUST00000107811 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col11a1Q61245 Nfs1-202ENSMUST00000109600 709 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Col11a1Q61245 Nmu-201ENSMUST00000031146 828 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col11a1Q61245 Zkscan4-202ENSMUST00000225845 1506 ntBASIC19.71■□□□□ 0.75
Col11a1Q61245 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col11a1Q61245 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Col11a1Q61245 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC19.7■□□□□ 0.74
Col11a1Q61245 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Col11a1Q61245 Tssc4-208ENSMUST00000208779 647 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Col11a1Q61245 Mrpl36-202ENSMUST00000221730 717 ntAPPRIS P1 TSL 3 BASIC19.7■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 28.6 ms