Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Gm18669-201ENSMUST00000216049 778 ntBASIC19.39■□□□□ 0.69
Col6a1Q04857 9130024F11Rik-201ENSMUST00000135238 1300 ntTSL 2 BASIC19.39■□□□□ 0.69
Col6a1Q04857 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Col6a1Q04857 Bmpr1b-203ENSMUST00000106230 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Col6a1Q04857 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Col6a1Q04857 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Col6a1Q04857 Gm5953-201ENSMUST00000220644 2616 ntBASIC19.38■□□□□ 0.69
Col6a1Q04857 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Col6a1Q04857 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Col6a1Q04857 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Col6a1Q04857 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC19.38■□□□□ 0.69
Col6a1Q04857 Mir2861-201ENSMUST00000175539 82 ntBASIC19.38■□□□□ 0.69
Col6a1Q04857 Gm4217-201ENSMUST00000182243 1002 ntBASIC19.38■□□□□ 0.69
Col6a1Q04857 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Col6a1Q04857 Shc3-203ENSMUST00000223543 1241 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Col6a1Q04857 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Col6a1Q04857 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
Col6a1Q04857 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC19.38■□□□□ 0.69
Col6a1Q04857 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Col6a1Q04857 Fbxo24-202ENSMUST00000111002 2306 ntTSL 5 BASIC19.37■□□□□ 0.69
Col6a1Q04857 Gm35558-201ENSMUST00000222675 2219 ntBASIC19.37■□□□□ 0.69
Col6a1Q04857 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Col6a1Q04857 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Col6a1Q04857 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC19.37■□□□□ 0.69
Col6a1Q04857 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Col6a1Q04857 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC19.37■□□□□ 0.69
Col6a1Q04857 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Col6a1Q04857 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC19.37■□□□□ 0.69
Col6a1Q04857 Fam159b-201ENSMUST00000043061 1310 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Col6a1Q04857 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Col6a1Q04857 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC19.37■□□□□ 0.69
Col6a1Q04857 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
Col6a1Q04857 Kiss1r-202ENSMUST00000219745 979 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Col6a1Q04857 Coq7-201ENSMUST00000032887 914 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Col6a1Q04857 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
Col6a1Q04857 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
Col6a1Q04857 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC19.37■□□□□ 0.69
Col6a1Q04857 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Col6a1Q04857 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
Col6a1Q04857 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
Col6a1Q04857 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
Col6a1Q04857 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Col6a1Q04857 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Col6a1Q04857 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Col6a1Q04857 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Col6a1Q04857 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Col6a1Q04857 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Col6a1Q04857 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Col6a1Q04857 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Col6a1Q04857 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
Col6a1Q04857 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Col6a1Q04857 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Col6a1Q04857 Nkd1-201ENSMUST00000034086 3035 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Col6a1Q04857 Bcat2-201ENSMUST00000033098 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Col6a1Q04857 Rarb-207ENSMUST00000225921 2756 ntBASIC19.36■□□□□ 0.69
Col6a1Q04857 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC19.36■□□□□ 0.69
Col6a1Q04857 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Col6a1Q04857 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Col6a1Q04857 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Col6a1Q04857 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC19.35■□□□□ 0.69
Col6a1Q04857 Pigw-201ENSMUST00000067058 2675 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Col6a1Q04857 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Col6a1Q04857 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
Col6a1Q04857 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC19.35■□□□□ 0.69
Col6a1Q04857 Gm13420-201ENSMUST00000129574 1091 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
Col6a1Q04857 Muc2-203ENSMUST00000179227 399 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Col6a1Q04857 Gm29518-201ENSMUST00000190858 372 ntBASIC19.35■□□□□ 0.69
Col6a1Q04857 Gm38973-201ENSMUST00000206810 878 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Col6a1Q04857 Fam92a-201ENSMUST00000087052 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Col6a1Q04857 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Col6a1Q04857 Eva1c-201ENSMUST00000037539 1698 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Col6a1Q04857 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Col6a1Q04857 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC19.35■□□□□ 0.69
Col6a1Q04857 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
Col6a1Q04857 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC19.35■□□□□ 0.69
Col6a1Q04857 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Col6a1Q04857 Bnip2-203ENSMUST00000117450 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Col6a1Q04857 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Col6a1Q04857 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Col6a1Q04857 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col6a1Q04857 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col6a1Q04857 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col6a1Q04857 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col6a1Q04857 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC19.34■□□□□ 0.69
Col6a1Q04857 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Col6a1Q04857 Rpl19-ps10-201ENSMUST00000205555 330 ntBASIC19.34■□□□□ 0.69
Col6a1Q04857 Gm21559-201ENSMUST00000220638 855 ntBASIC19.34■□□□□ 0.69
Col6a1Q04857 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col6a1Q04857 Gm8587-201ENSMUST00000076538 843 ntBASIC19.34■□□□□ 0.69
Col6a1Q04857 Mrpl43-201ENSMUST00000097715 1213 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col6a1Q04857 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col6a1Q04857 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
Col6a1Q04857 Gm44544-201ENSMUST00000207052 1844 ntBASIC19.34■□□□□ 0.69
Col6a1Q04857 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col6a1Q04857 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col6a1Q04857 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col6a1Q04857 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Col6a1Q04857 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col6a1Q04857 Lat2-202ENSMUST00000077636 1717 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Col6a1Q04857 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 47.8 ms