Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Col8a1Q00780 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
Col8a1Q00780 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
Col8a1Q00780 Gm44544-201ENSMUST00000207052 1844 ntBASIC14.96□□□□□ -0.01
Col8a1Q00780 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC14.96□□□□□ -0.01
Col8a1Q00780 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Col8a1Q00780 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
Col8a1Q00780 Cdc34-202ENSMUST00000166603 1078 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Col8a1Q00780 Gm3764-202ENSMUST00000180582 440 ntTSL 5 BASIC14.96□□□□□ -0.01
Col8a1Q00780 Gm27389-201ENSMUST00000183622 195 ntBASIC14.96□□□□□ -0.01
Col8a1Q00780 BC048679-203ENSMUST00000207871 567 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
Col8a1Q00780 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC14.96□□□□□ -0.01
Col8a1Q00780 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Col8a1Q00780 Taar2-201ENSMUST00000079134 1020 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Col8a1Q00780 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Col8a1Q00780 Car2-201ENSMUST00000029078 1788 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
Col8a1Q00780 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col8a1Q00780 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col8a1Q00780 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col8a1Q00780 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col8a1Q00780 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col8a1Q00780 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col8a1Q00780 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Col8a1Q00780 Prkcz-203ENSMUST00000105624 694 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Col8a1Q00780 Rnf186-201ENSMUST00000116094 1249 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
Col8a1Q00780 Mpv17l-205ENSMUST00000143697 580 ntTSL 2 BASIC14.95□□□□□ -0.02
Col8a1Q00780 Slc19a2-204ENSMUST00000169394 894 ntTSL 5 BASIC14.95□□□□□ -0.02
Col8a1Q00780 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col8a1Q00780 Thoc7-201ENSMUST00000065865 937 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col8a1Q00780 Ahnak-201ENSMUST00000092955 1046 ntAPPRIS ALT2 TSL 2 BASIC14.95□□□□□ -0.02
Col8a1Q00780 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col8a1Q00780 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col8a1Q00780 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col8a1Q00780 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col8a1Q00780 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC14.95□□□□□ -0.02
Col8a1Q00780 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC14.95□□□□□ -0.02
Col8a1Q00780 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Col8a1Q00780 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC14.94□□□□□ -0.02
Col8a1Q00780 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
Col8a1Q00780 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Col8a1Q00780 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Col8a1Q00780 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Col8a1Q00780 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Col8a1Q00780 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Col8a1Q00780 Ube2d1-201ENSMUST00000020085 1431 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Col8a1Q00780 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Col8a1Q00780 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Col8a1Q00780 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Col8a1Q00780 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Col8a1Q00780 Mras-202ENSMUST00000119472 1190 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Col8a1Q00780 Pdcd5-202ENSMUST00000120714 767 ntTSL 3 BASIC14.94□□□□□ -0.02
Col8a1Q00780 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Col8a1Q00780 Flt3l-206ENSMUST00000210197 834 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
Col8a1Q00780 Irak1bp1-201ENSMUST00000034783 1159 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Col8a1Q00780 Hist1h2af-201ENSMUST00000073261 399 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
Col8a1Q00780 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Col8a1Q00780 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC14.94□□□□□ -0.02
Col8a1Q00780 Pdgfa-203ENSMUST00000110896 1363 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
Col8a1Q00780 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC14.94□□□□□ -0.02
Col8a1Q00780 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
Col8a1Q00780 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Col8a1Q00780 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Col8a1Q00780 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
Col8a1Q00780 Alas2-201ENSMUST00000066337 2037 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
Col8a1Q00780 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Col8a1Q00780 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Col8a1Q00780 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
Col8a1Q00780 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Col8a1Q00780 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Col8a1Q00780 Gm10461-201ENSMUST00000202073 4786 ntBASIC14.93□□□□□ -0.02
Col8a1Q00780 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
Col8a1Q00780 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Col8a1Q00780 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC14.93□□□□□ -0.02
Col8a1Q00780 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Col8a1Q00780 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC14.93□□□□□ -0.02
Col8a1Q00780 Hnrnph3-203ENSMUST00000119814 682 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Col8a1Q00780 Gm12963-201ENSMUST00000131846 783 ntTSL 5 BASIC14.93□□□□□ -0.02
Col8a1Q00780 Tma7-201ENSMUST00000167504 944 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Col8a1Q00780 Gm18958-201ENSMUST00000174258 762 ntBASIC14.93□□□□□ -0.02
Col8a1Q00780 Mir3081-201ENSMUST00000175305 84 ntBASIC14.93□□□□□ -0.02
Col8a1Q00780 Mir2861-201ENSMUST00000175539 82 ntBASIC14.93□□□□□ -0.02
Col8a1Q00780 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
Col8a1Q00780 Gm26661-201ENSMUST00000181025 471 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
Col8a1Q00780 A830052D11Rik-201ENSMUST00000181729 1130 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Col8a1Q00780 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Col8a1Q00780 Gm11748-201ENSMUST00000153825 1498 ntTSL 2 BASIC14.93□□□□□ -0.02
Col8a1Q00780 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
Col8a1Q00780 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Col8a1Q00780 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Col8a1Q00780 Ttpal-202ENSMUST00000109408 1999 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Col8a1Q00780 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col8a1Q00780 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col8a1Q00780 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col8a1Q00780 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col8a1Q00780 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col8a1Q00780 Sap18-203ENSMUST00000111269 459 ntTSL 2 BASIC14.92□□□□□ -0.02
Col8a1Q00780 Ppil3-202ENSMUST00000114345 1175 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Col8a1Q00780 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Col8a1Q00780 Gm9013-201ENSMUST00000132939 882 ntBASIC14.92□□□□□ -0.02
Col8a1Q00780 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Retrieved 100 of 76,532 protein–RNA pairs in 28.7 ms