Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Hmgb1P63158 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Hmgb1P63158 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Hmgb1P63158 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Hmgb1P63158 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
Hmgb1P63158 Gm12933-201ENSMUST00000120203 872 ntBASIC19.34■□□□□ 0.69
Hmgb1P63158 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Hmgb1P63158 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Hmgb1P63158 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Hmgb1P63158 Zdhhc16-201ENSMUST00000026154 1821 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Hmgb1P63158 Tm7sf2-201ENSMUST00000025713 1471 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Hmgb1P63158 Raver2-201ENSMUST00000038463 4045 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Hmgb1P63158 Gm43808-201ENSMUST00000202534 2065 ntBASIC19.33■□□□□ 0.69
Hmgb1P63158 Snca-201ENSMUST00000114268 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Hmgb1P63158 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC19.33■□□□□ 0.68
Hmgb1P63158 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Hmgb1P63158 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
Hmgb1P63158 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
Hmgb1P63158 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
Hmgb1P63158 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Hmgb1P63158 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Hmgb1P63158 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Hmgb1P63158 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC19.33■□□□□ 0.68
Hmgb1P63158 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Hmgb1P63158 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
Hmgb1P63158 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC19.32■□□□□ 0.68
Hmgb1P63158 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Hmgb1P63158 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC19.32■□□□□ 0.68
Hmgb1P63158 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
Hmgb1P63158 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Hmgb1P63158 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Hmgb1P63158 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Hmgb1P63158 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Hmgb1P63158 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Hmgb1P63158 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC19.32■□□□□ 0.68
Hmgb1P63158 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Hmgb1P63158 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Hmgb1P63158 Fbxl3-201ENSMUST00000022720 4309 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Hmgb1P63158 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Hmgb1P63158 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Hmgb1P63158 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
Hmgb1P63158 Serinc2-201ENSMUST00000105996 1878 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
Hmgb1P63158 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Hmgb1P63158 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Hmgb1P63158 Nuak1-201ENSMUST00000020220 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Hmgb1P63158 Camsap3-206ENSMUST00000207533 2584 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Hmgb1P63158 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Hmgb1P63158 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Hmgb1P63158 Gm11927-201ENSMUST00000118472 759 ntBASIC19.31■□□□□ 0.68
Hmgb1P63158 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Hmgb1P63158 Gnb5-201ENSMUST00000076889 1188 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Hmgb1P63158 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Hmgb1P63158 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC19.31■□□□□ 0.68
Hmgb1P63158 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Hmgb1P63158 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Hmgb1P63158 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Hmgb1P63158 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Hmgb1P63158 Cyb5a-204ENSMUST00000160180 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Hmgb1P63158 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Hmgb1P63158 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Hmgb1P63158 Man2a1-201ENSMUST00000086723 6991 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Hmgb1P63158 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
Hmgb1P63158 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Hmgb1P63158 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC19.3■□□□□ 0.68
Hmgb1P63158 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Hmgb1P63158 Mapk8ip3-221ENSMUST00000178969 5579 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
Hmgb1P63158 Eps8-201ENSMUST00000058210 4567 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Hmgb1P63158 Gnao1-201ENSMUST00000034198 2948 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Hmgb1P63158 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Hmgb1P63158 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Hmgb1P63158 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC19.3■□□□□ 0.68
Hmgb1P63158 Gm15847-201ENSMUST00000121417 1065 ntBASIC19.3■□□□□ 0.68
Hmgb1P63158 Dmrta2os-202ENSMUST00000141893 691 ntTSL 3 BASIC19.3■□□□□ 0.68
Hmgb1P63158 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC19.3■□□□□ 0.68
Hmgb1P63158 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Hmgb1P63158 Ckap4-202ENSMUST00000167671 2606 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Hmgb1P63158 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Hmgb1P63158 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Hmgb1P63158 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Hmgb1P63158 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC19.3■□□□□ 0.68
Hmgb1P63158 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC19.29■□□□□ 0.68
Hmgb1P63158 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC19.29■□□□□ 0.68
Hmgb1P63158 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Hmgb1P63158 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Hmgb1P63158 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Hmgb1P63158 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Hmgb1P63158 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Hmgb1P63158 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
Hmgb1P63158 Mir2861-201ENSMUST00000175539 82 ntBASIC19.29■□□□□ 0.68
Hmgb1P63158 Mir8112-201ENSMUST00000184382 131 ntBASIC19.29■□□□□ 0.68
Hmgb1P63158 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC19.29■□□□□ 0.68
Hmgb1P63158 Chrac1-201ENSMUST00000089765 871 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Hmgb1P63158 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Hmgb1P63158 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Hmgb1P63158 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Hmgb1P63158 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Hmgb1P63158 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Hmgb1P63158 AC122769.4-201ENSMUST00000228166 901 ntBASIC19.28■□□□□ 0.68
Hmgb1P63158 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Hmgb1P63158 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 18.9 ms