Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cdh11P55288 P2rx5-201ENSMUST00000006104 2395 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cdh11P55288 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cdh11P55288 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cdh11P55288 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC16.04■□□□□ 0.16
Cdh11P55288 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
Cdh11P55288 AC107452.1-201ENSMUST00000227963 481 ntBASIC16.04■□□□□ 0.16
Cdh11P55288 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Cdh11P55288 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
Cdh11P55288 Zfp865-203ENSMUST00000085427 2751 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Cdh11P55288 Best2-203ENSMUST00000209421 2212 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cdh11P55288 Stac2-201ENSMUST00000017544 3050 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cdh11P55288 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cdh11P55288 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
Cdh11P55288 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cdh11P55288 Tgds-204ENSMUST00000228543 1594 ntBASIC16.04■□□□□ 0.16
Cdh11P55288 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cdh11P55288 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Cdh11P55288 Gm37194-201ENSMUST00000193092 3031 ntBASIC16.03■□□□□ 0.16
Cdh11P55288 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Cdh11P55288 Bean1-203ENSMUST00000167633 3275 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
Cdh11P55288 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Cdh11P55288 Schip1-203ENSMUST00000170788 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Cdh11P55288 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC16.03■□□□□ 0.16
Cdh11P55288 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
Cdh11P55288 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC16.03■□□□□ 0.16
Cdh11P55288 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC16.03■□□□□ 0.16
Cdh11P55288 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Cdh11P55288 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
Cdh11P55288 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
Cdh11P55288 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Cdh11P55288 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Cdh11P55288 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Cdh11P55288 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Cdh11P55288 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC16.03■□□□□ 0.16
Cdh11P55288 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Cdh11P55288 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Cdh11P55288 Zfp800-203ENSMUST00000115321 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Cdh11P55288 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC16.02■□□□□ 0.16
Cdh11P55288 Nsg1-201ENSMUST00000031009 2581 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Cdh11P55288 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC16.02■□□□□ 0.16
Cdh11P55288 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Cdh11P55288 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Cdh11P55288 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
Cdh11P55288 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Cdh11P55288 Stk35-202ENSMUST00000166282 5445 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Cdh11P55288 Gm43294-201ENSMUST00000202850 2490 ntBASIC16.02■□□□□ 0.16
Cdh11P55288 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC16.02■□□□□ 0.16
Cdh11P55288 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Cdh11P55288 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
Cdh11P55288 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Cdh11P55288 Gm20517-202ENSMUST00000132397 4807 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Cdh11P55288 Mrs2-201ENSMUST00000021772 7035 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
Cdh11P55288 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
Cdh11P55288 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
Cdh11P55288 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Cdh11P55288 Lancl2-202ENSMUST00000072954 2245 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Cdh11P55288 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
Cdh11P55288 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Cdh11P55288 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Cdh11P55288 Bicc1-203ENSMUST00000143791 5431 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Cdh11P55288 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Cdh11P55288 Ric1-201ENSMUST00000043610 7190 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
Cdh11P55288 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
Cdh11P55288 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
Cdh11P55288 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC16.01■□□□□ 0.15
Cdh11P55288 Nudt8-203ENSMUST00000122924 1082 ntTSL 2 BASIC16.01■□□□□ 0.15
Cdh11P55288 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
Cdh11P55288 Gm20760-201ENSMUST00000179197 648 ntBASIC16.01■□□□□ 0.15
Cdh11P55288 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Cdh11P55288 Gm44672-201ENSMUST00000206944 1098 ntBASIC16.01■□□□□ 0.15
Cdh11P55288 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC16.01■□□□□ 0.15
Cdh11P55288 AC122769.4-201ENSMUST00000228166 901 ntBASIC16.01■□□□□ 0.15
Cdh11P55288 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
Cdh11P55288 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
Cdh11P55288 Homez-202ENSMUST00000142283 4713 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Cdh11P55288 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
Cdh11P55288 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Cdh11P55288 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Cdh11P55288 Myo5a-214ENSMUST00000155282 6372 ntAPPRIS P5 TSL 5 BASIC16.01■□□□□ 0.15
Cdh11P55288 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Cdh11P55288 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC16■□□□□ 0.15
Cdh11P55288 Zbtb32-202ENSMUST00000108151 1775 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
Cdh11P55288 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Cdh11P55288 A930017K11Rik-201ENSMUST00000162431 2539 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Cdh11P55288 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC16■□□□□ 0.15
Cdh11P55288 4930503L19Rik-201ENSMUST00000067556 2291 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
Cdh11P55288 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Cdh11P55288 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
Cdh11P55288 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC16■□□□□ 0.15
Cdh11P55288 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC16■□□□□ 0.15
Cdh11P55288 Gm26524-201ENSMUST00000192339 390 ntBASIC16■□□□□ 0.15
Cdh11P55288 Gm19094-201ENSMUST00000209791 1246 ntBASIC16■□□□□ 0.15
Cdh11P55288 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
Cdh11P55288 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Cdh11P55288 Gm45244-201ENSMUST00000211328 2200 ntBASIC16■□□□□ 0.15
Cdh11P55288 Camsap2-203ENSMUST00000192314 4916 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
Cdh11P55288 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Cdh11P55288 Zcchc4-203ENSMUST00000113904 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
Cdh11P55288 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Retrieved 100 of 76,532 protein–RNA pairs in 41.9 ms