Protein–RNA interactions for Protein: P49135

Ercc3, General transcription and DNA repair factor IIH helicase subunit XPB, mousemouse

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ercc3P49135 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Ercc3P49135 Sept9-201ENSMUST00000019038 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
Ercc3P49135 Zcchc6-207ENSMUST00000225576 2499 ntBASIC20.82■□□□□ 0.92
Ercc3P49135 Tsnax-202ENSMUST00000212603 2169 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Ercc3P49135 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Ercc3P49135 Gm6576-201ENSMUST00000169678 883 ntBASIC20.82■□□□□ 0.92
Ercc3P49135 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Ercc3P49135 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Ercc3P49135 Ino80e-201ENSMUST00000050833 1944 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Ercc3P49135 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
Ercc3P49135 Fam69a-201ENSMUST00000031198 2721 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Ercc3P49135 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC20.82■□□□□ 0.92
Ercc3P49135 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Ercc3P49135 Eif4enif1-203ENSMUST00000110049 3614 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Ercc3P49135 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ercc3P49135 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ercc3P49135 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ercc3P49135 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ercc3P49135 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
Ercc3P49135 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
Ercc3P49135 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ercc3P49135 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ercc3P49135 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
Ercc3P49135 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ercc3P49135 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Ercc3P49135 AC175538.1-201ENSMUST00000225343 1269 ntBASIC20.81■□□□□ 0.92
Ercc3P49135 Eif1a-202ENSMUST00000168382 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ercc3P49135 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ercc3P49135 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ercc3P49135 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC20.81■□□□□ 0.92
Ercc3P49135 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ercc3P49135 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ercc3P49135 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ercc3P49135 Camsap3-212ENSMUST00000208240 2572 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Ercc3P49135 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC20.81■□□□□ 0.92
Ercc3P49135 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC20.81■□□□□ 0.92
Ercc3P49135 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Ercc3P49135 4430402I18Rik-205ENSMUST00000162110 1559 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
Ercc3P49135 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Ercc3P49135 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Ercc3P49135 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Ercc3P49135 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Ercc3P49135 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Ercc3P49135 Gm715-201ENSMUST00000117865 831 ntBASIC20.8■□□□□ 0.92
Ercc3P49135 Dohh-206ENSMUST00000131968 672 ntAPPRIS P1 TSL 3 BASIC20.8■□□□□ 0.92
Ercc3P49135 Gm29791-202ENSMUST00000207888 369 ntBASIC20.8■□□□□ 0.92
Ercc3P49135 Vhl-201ENSMUST00000035673 2792 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Ercc3P49135 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
Ercc3P49135 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC20.8■□□□□ 0.92
Ercc3P49135 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Ercc3P49135 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
Ercc3P49135 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Ercc3P49135 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
Ercc3P49135 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Ercc3P49135 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Ercc3P49135 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Ercc3P49135 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
Ercc3P49135 Mettl4-ps1-202ENSMUST00000130218 1323 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Ercc3P49135 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
Ercc3P49135 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ercc3P49135 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ercc3P49135 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
Ercc3P49135 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ercc3P49135 Card10-203ENSMUST00000170584 3220 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
Ercc3P49135 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Ercc3P49135 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
Ercc3P49135 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ercc3P49135 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ercc3P49135 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
Ercc3P49135 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
Ercc3P49135 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ercc3P49135 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ercc3P49135 Fam98a-201ENSMUST00000112507 2817 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ercc3P49135 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC20.79■□□□□ 0.92
Ercc3P49135 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ercc3P49135 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ercc3P49135 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ercc3P49135 H2-Q7-202ENSMUST00000076256 1523 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
Ercc3P49135 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC20.78■□□□□ 0.92
Ercc3P49135 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Ercc3P49135 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Ercc3P49135 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC20.78■□□□□ 0.92
Ercc3P49135 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC20.78■□□□□ 0.92
Ercc3P49135 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Ercc3P49135 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC20.78■□□□□ 0.92
Ercc3P49135 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Ercc3P49135 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
Ercc3P49135 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Ercc3P49135 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC20.78■□□□□ 0.92
Ercc3P49135 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Ercc3P49135 Mag-207ENSMUST00000191081 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Ercc3P49135 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Ercc3P49135 Meox1-201ENSMUST00000057054 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Ercc3P49135 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Ercc3P49135 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Ercc3P49135 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Ercc3P49135 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Ercc3P49135 Sqstm1-205ENSMUST00000143379 1266 ntTSL 5 BASIC20.77■□□□□ 0.92
Ercc3P49135 Gm44965-201ENSMUST00000204121 360 ntAPPRIS P1 TSL 3 BASIC20.77■□□□□ 0.92
Ercc3P49135 4930503L19Rik-201ENSMUST00000067556 2291 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 18.3 ms