Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Rfx1P48377 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC21.04■□□□□ 0.96
Rfx1P48377 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC21.04■□□□□ 0.96
Rfx1P48377 Abhd5-204ENSMUST00000156520 3157 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Rfx1P48377 Mepce-201ENSMUST00000031740 3128 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Rfx1P48377 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
Rfx1P48377 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Rfx1P48377 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Rfx1P48377 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Rfx1P48377 Gm10129-202ENSMUST00000193100 1316 ntBASIC21.04■□□□□ 0.96
Rfx1P48377 Pld2-201ENSMUST00000018429 3659 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
Rfx1P48377 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
Rfx1P48377 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
Rfx1P48377 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC21.03■□□□□ 0.96
Rfx1P48377 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Rfx1P48377 Lrrc43-202ENSMUST00000121444 2016 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Rfx1P48377 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Rfx1P48377 Cct8-201ENSMUST00000026704 2394 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Rfx1P48377 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
Rfx1P48377 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Rfx1P48377 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
Rfx1P48377 Pard3-226ENSMUST00000162907 4682 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Rfx1P48377 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Rfx1P48377 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Rfx1P48377 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Rfx1P48377 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC21.02■□□□□ 0.96
Rfx1P48377 Gm26917-202ENSMUST00000192833 3329 ntBASIC21.02■□□□□ 0.96
Rfx1P48377 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Rfx1P48377 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC21.02■□□□□ 0.96
Rfx1P48377 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Rfx1P48377 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Rfx1P48377 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Rfx1P48377 Rnf26-208ENSMUST00000185479 2964 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Rfx1P48377 Cadm3-201ENSMUST00000005470 2518 ntTSL 5 BASIC21.02■□□□□ 0.95
Rfx1P48377 Pigl-201ENSMUST00000014389 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
Rfx1P48377 Prpsap1-201ENSMUST00000106391 1841 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Rfx1P48377 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Rfx1P48377 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Rfx1P48377 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Rfx1P48377 Pcdh7-201ENSMUST00000068110 5611 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
Rfx1P48377 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Rfx1P48377 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Rfx1P48377 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
Rfx1P48377 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Rfx1P48377 Krtap5-3-201ENSMUST00000084414 1074 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
Rfx1P48377 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
Rfx1P48377 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Rfx1P48377 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC21.01■□□□□ 0.95
Rfx1P48377 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Rfx1P48377 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
Rfx1P48377 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Rfx1P48377 Esyt2-205ENSMUST00000220816 4287 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Rfx1P48377 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Rfx1P48377 Gm45412-201ENSMUST00000210217 2275 ntBASIC21.01■□□□□ 0.95
Rfx1P48377 Serinc2-201ENSMUST00000105996 1878 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
Rfx1P48377 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC21■□□□□ 0.95
Rfx1P48377 Gas2-201ENSMUST00000051912 2181 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Rfx1P48377 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
Rfx1P48377 Zbtb11os1-201ENSMUST00000186480 1350 ntBASIC21■□□□□ 0.95
Rfx1P48377 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Rfx1P48377 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Rfx1P48377 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC21■□□□□ 0.95
Rfx1P48377 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC21■□□□□ 0.95
Rfx1P48377 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Rfx1P48377 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Rfx1P48377 Adsl-204ENSMUST00000164806 1595 ntTSL 5 BASIC21■□□□□ 0.95
Rfx1P48377 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Rfx1P48377 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
Rfx1P48377 Igsf23-201ENSMUST00000043440 1908 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
Rfx1P48377 Gm45774-201ENSMUST00000211992 2665 ntBASIC21■□□□□ 0.95
Rfx1P48377 Hivep3-201ENSMUST00000084306 2973 ntBASIC21■□□□□ 0.95
Rfx1P48377 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC21■□□□□ 0.95
Rfx1P48377 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Rfx1P48377 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Rfx1P48377 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Rfx1P48377 Zdhhc2-201ENSMUST00000049389 3381 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Rfx1P48377 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
Rfx1P48377 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Rfx1P48377 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC20.99■□□□□ 0.95
Rfx1P48377 Gm42778-201ENSMUST00000199644 553 ntBASIC20.99■□□□□ 0.95
Rfx1P48377 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC20.99■□□□□ 0.95
Rfx1P48377 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Rfx1P48377 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Rfx1P48377 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
Rfx1P48377 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
Rfx1P48377 Slc6a8-204ENSMUST00000114467 2509 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Rfx1P48377 Evx1-201ENSMUST00000031787 2877 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Rfx1P48377 Sult2b1-204ENSMUST00000209739 1858 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
Rfx1P48377 Dhx36-201ENSMUST00000029336 5620 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Rfx1P48377 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC20.98■□□□□ 0.95
Rfx1P48377 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
Rfx1P48377 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Rfx1P48377 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Rfx1P48377 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Rfx1P48377 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Rfx1P48377 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Rfx1P48377 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
Rfx1P48377 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Rfx1P48377 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC20.98■□□□□ 0.95
Rfx1P48377 Ap3s1-204ENSMUST00000225520 957 ntBASIC20.98■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 22.4 ms