Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Cdx2P43241 Gm7461-201ENSMUST00000058918 827 ntBASIC16.71■□□□□ 0.27
Cdx2P43241 Cmtm7-202ENSMUST00000084867 874 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Cdx2P43241 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
Cdx2P43241 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Cdx2P43241 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
Cdx2P43241 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
Cdx2P43241 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.26
Cdx2P43241 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.26
Cdx2P43241 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Cdx2P43241 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Cdx2P43241 Gm7008-201ENSMUST00000038121 1366 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Cdx2P43241 C030037D09Rik-202ENSMUST00000136201 1216 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Cdx2P43241 4930505N22Rik-201ENSMUST00000181820 945 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Cdx2P43241 Ndufb8-201ENSMUST00000026222 680 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Cdx2P43241 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Cdx2P43241 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC16.7■□□□□ 0.26
Cdx2P43241 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Cdx2P43241 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
Cdx2P43241 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
Cdx2P43241 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Cdx2P43241 Nlrp5-ps-201ENSMUST00000044683 1913 ntTSL 2 BASIC16.7■□□□□ 0.26
Cdx2P43241 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Cdx2P43241 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Cdx2P43241 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Cdx2P43241 Gm5784-201ENSMUST00000179344 2478 ntBASIC16.7■□□□□ 0.26
Cdx2P43241 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Cdx2P43241 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Cdx2P43241 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC16.69■□□□□ 0.26
Cdx2P43241 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC16.69■□□□□ 0.26
Cdx2P43241 Gm2431-201ENSMUST00000171531 519 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
Cdx2P43241 Gm38973-201ENSMUST00000206810 878 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Cdx2P43241 Gm18669-201ENSMUST00000216049 778 ntBASIC16.69■□□□□ 0.26
Cdx2P43241 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Cdx2P43241 Ndufv3-201ENSMUST00000046288 1537 ntAPPRIS P4 TSL 1 (best) BASIC16.69■□□□□ 0.26
Cdx2P43241 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
Cdx2P43241 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
Cdx2P43241 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
Cdx2P43241 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC16.68■□□□□ 0.26
Cdx2P43241 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
Cdx2P43241 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Cdx2P43241 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Cdx2P43241 Gm26039-201ENSMUST00000158152 144 ntBASIC16.68■□□□□ 0.26
Cdx2P43241 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Cdx2P43241 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC16.68■□□□□ 0.26
Cdx2P43241 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Cdx2P43241 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Cdx2P43241 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Cdx2P43241 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Cdx2P43241 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
Cdx2P43241 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Cdx2P43241 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Cdx2P43241 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Cdx2P43241 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
Cdx2P43241 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC16.68■□□□□ 0.26
Cdx2P43241 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC16.67■□□□□ 0.26
Cdx2P43241 Mrpl10-201ENSMUST00000001485 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Cdx2P43241 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Cdx2P43241 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Cdx2P43241 4933427J07Rik-201ENSMUST00000156275 1533 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Cdx2P43241 Gm11950-201ENSMUST00000121615 838 ntBASIC16.67■□□□□ 0.26
Cdx2P43241 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC16.67■□□□□ 0.26
Cdx2P43241 Gm15545-203ENSMUST00000150613 1059 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Cdx2P43241 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC16.67■□□□□ 0.26
Cdx2P43241 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Cdx2P43241 Gm3272-201ENSMUST00000181181 1229 ntBASIC16.67■□□□□ 0.26
Cdx2P43241 Gm10566-201ENSMUST00000086739 996 ntBASIC16.67■□□□□ 0.26
Cdx2P43241 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
Cdx2P43241 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Cdx2P43241 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC16.67■□□□□ 0.26
Cdx2P43241 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
Cdx2P43241 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Cdx2P43241 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC16.67■□□□□ 0.26
Cdx2P43241 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Cdx2P43241 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC16.67■□□□□ 0.26
Cdx2P43241 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC16.67■□□□□ 0.26
Cdx2P43241 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
Cdx2P43241 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Cdx2P43241 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC16.66■□□□□ 0.26
Cdx2P43241 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
Cdx2P43241 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Cdx2P43241 Atp6v0b-208ENSMUST00000150204 935 ntTSL 5 BASIC16.66■□□□□ 0.26
Cdx2P43241 1500009L16Rik-201ENSMUST00000150459 1194 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Cdx2P43241 Klf13-202ENSMUST00000183817 599 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Cdx2P43241 Gm10358-201ENSMUST00000212864 1250 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
Cdx2P43241 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC16.66■□□□□ 0.26
Cdx2P43241 Timm8a2-201ENSMUST00000045976 913 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Cdx2P43241 Sirt7-201ENSMUST00000080202 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Cdx2P43241 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC16.66■□□□□ 0.26
Cdx2P43241 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Cdx2P43241 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Cdx2P43241 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Cdx2P43241 Eva1c-201ENSMUST00000037539 1698 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cdx2P43241 Pdgfa-203ENSMUST00000110896 1363 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
Cdx2P43241 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cdx2P43241 Tmem241-205ENSMUST00000209859 1426 ntAPPRIS P4 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cdx2P43241 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cdx2P43241 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cdx2P43241 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cdx2P43241 Tmsb10-202ENSMUST00000114049 690 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 77.1 ms