Protein–RNA interactions for Protein: P35123

Usp4, Ubiquitin carboxyl-terminal hydrolase 4, mousemouse

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp4P35123 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Usp4P35123 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC18.42■□□□□ 0.54
Usp4P35123 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC18.42■□□□□ 0.54
Usp4P35123 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Usp4P35123 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Usp4P35123 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
Usp4P35123 Dnm1-216ENSMUST00000201494 2732 ntTSL 5 BASIC18.42■□□□□ 0.54
Usp4P35123 Diaph1-205ENSMUST00000115634 5666 ntAPPRIS P3 TSL 5 BASIC18.42■□□□□ 0.54
Usp4P35123 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Usp4P35123 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC18.42■□□□□ 0.54
Usp4P35123 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC18.42■□□□□ 0.54
Usp4P35123 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Usp4P35123 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC18.42■□□□□ 0.54
Usp4P35123 Gpr20-201ENSMUST00000064166 2144 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Usp4P35123 Gm4968-201ENSMUST00000071458 858 ntBASIC18.42■□□□□ 0.54
Usp4P35123 Senp2-201ENSMUST00000023561 4499 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Usp4P35123 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
Usp4P35123 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC18.42■□□□□ 0.54
Usp4P35123 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
Usp4P35123 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Usp4P35123 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Usp4P35123 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Usp4P35123 Gm44544-201ENSMUST00000207052 1844 ntBASIC18.42■□□□□ 0.54
Usp4P35123 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Usp4P35123 Gm17484-201ENSMUST00000167899 2322 ntTSL 2 BASIC18.41■□□□□ 0.54
Usp4P35123 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Usp4P35123 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Usp4P35123 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC18.41■□□□□ 0.54
Usp4P35123 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Usp4P35123 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
Usp4P35123 Gm13534-201ENSMUST00000121169 513 ntBASIC18.41■□□□□ 0.54
Usp4P35123 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Usp4P35123 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Usp4P35123 Plppr2-203ENSMUST00000190387 2608 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Usp4P35123 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC18.41■□□□□ 0.54
Usp4P35123 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Usp4P35123 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Usp4P35123 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Usp4P35123 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC18.41■□□□□ 0.54
Usp4P35123 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Usp4P35123 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC18.4■□□□□ 0.54
Usp4P35123 Zmynd15-203ENSMUST00000108563 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Usp4P35123 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Usp4P35123 Gm45774-201ENSMUST00000211992 2665 ntBASIC18.4■□□□□ 0.54
Usp4P35123 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Usp4P35123 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Usp4P35123 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Usp4P35123 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC18.4■□□□□ 0.54
Usp4P35123 Gm20760-201ENSMUST00000179197 648 ntBASIC18.4■□□□□ 0.54
Usp4P35123 Gm5408-201ENSMUST00000197998 747 ntBASIC18.4■□□□□ 0.54
Usp4P35123 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC18.4■□□□□ 0.54
Usp4P35123 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Usp4P35123 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
Usp4P35123 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Usp4P35123 2810459M11Rik-202ENSMUST00000165824 3331 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
Usp4P35123 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Usp4P35123 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
Usp4P35123 Haglr-201ENSMUST00000100000 2085 ntBASIC18.4■□□□□ 0.54
Usp4P35123 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Usp4P35123 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
Usp4P35123 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.54
Usp4P35123 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.54
Usp4P35123 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Usp4P35123 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Usp4P35123 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Usp4P35123 Nfe2l1-202ENSMUST00000107657 3869 ntAPPRIS P3 TSL 5 BASIC18.39■□□□□ 0.53
Usp4P35123 Nsmf-201ENSMUST00000006646 2922 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
Usp4P35123 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Usp4P35123 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Usp4P35123 Zhx1-202ENSMUST00000110168 5212 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
Usp4P35123 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Usp4P35123 2610035D17Rik-201ENSMUST00000127263 1861 ntTSL 5 BASIC18.38■□□□□ 0.53
Usp4P35123 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC18.38■□□□□ 0.53
Usp4P35123 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Usp4P35123 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Usp4P35123 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC18.38■□□□□ 0.53
Usp4P35123 Tmem233-201ENSMUST00000111997 2477 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
Usp4P35123 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC18.37■□□□□ 0.53
Usp4P35123 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
Usp4P35123 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
Usp4P35123 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
Usp4P35123 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC18.37■□□□□ 0.53
Usp4P35123 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Usp4P35123 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Usp4P35123 Gm10653-202ENSMUST00000139570 835 ntBASIC18.37■□□□□ 0.53
Usp4P35123 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC18.37■□□□□ 0.53
Usp4P35123 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC18.37■□□□□ 0.53
Usp4P35123 Gm6365-201ENSMUST00000054711 744 ntBASIC18.37■□□□□ 0.53
Usp4P35123 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
Usp4P35123 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC18.37■□□□□ 0.53
Usp4P35123 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Usp4P35123 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Usp4P35123 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Usp4P35123 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC18.37■□□□□ 0.53
Usp4P35123 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Usp4P35123 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Usp4P35123 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC18.37■□□□□ 0.53
Usp4P35123 Dusp4-201ENSMUST00000033930 2740 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Usp4P35123 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Usp4P35123 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 20.6 ms