Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Chmp6P0C0A3 Mob2-201ENSMUST00000084418 1490 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Chmp6P0C0A3 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Chmp6P0C0A3 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
Chmp6P0C0A3 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC19.14■□□□□ 0.65
Chmp6P0C0A3 Picalm-206ENSMUST00000207484 8209 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
Chmp6P0C0A3 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Chmp6P0C0A3 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Chmp6P0C0A3 Zfp512b-201ENSMUST00000108789 5714 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Chmp6P0C0A3 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Chmp6P0C0A3 Gm18666-201ENSMUST00000190039 958 ntBASIC19.13■□□□□ 0.65
Chmp6P0C0A3 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Chmp6P0C0A3 Hebp1-201ENSMUST00000045855 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Chmp6P0C0A3 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Chmp6P0C0A3 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Chmp6P0C0A3 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
Chmp6P0C0A3 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Chmp6P0C0A3 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Chmp6P0C0A3 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Chmp6P0C0A3 Usp13-202ENSMUST00000108228 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Chmp6P0C0A3 Tbx2-201ENSMUST00000000095 3626 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Chmp6P0C0A3 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Chmp6P0C0A3 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Chmp6P0C0A3 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Chmp6P0C0A3 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Chmp6P0C0A3 Schip1-203ENSMUST00000170788 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Chmp6P0C0A3 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Chmp6P0C0A3 Nrn1-203ENSMUST00000223611 1443 ntBASIC19.12■□□□□ 0.65
Chmp6P0C0A3 Aqp2-201ENSMUST00000023752 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Chmp6P0C0A3 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC19.12■□□□□ 0.65
Chmp6P0C0A3 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Chmp6P0C0A3 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
Chmp6P0C0A3 Alkbh1-212ENSMUST00000185301 408 ntBASIC19.12■□□□□ 0.65
Chmp6P0C0A3 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC19.12■□□□□ 0.65
Chmp6P0C0A3 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC19.12■□□□□ 0.65
Chmp6P0C0A3 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Chmp6P0C0A3 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC19.12■□□□□ 0.65
Chmp6P0C0A3 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Chmp6P0C0A3 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
Chmp6P0C0A3 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Chmp6P0C0A3 Klf13-201ENSMUST00000063694 6396 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Chmp6P0C0A3 Tgds-204ENSMUST00000228543 1594 ntBASIC19.11■□□□□ 0.65
Chmp6P0C0A3 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Chmp6P0C0A3 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Chmp6P0C0A3 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Chmp6P0C0A3 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Chmp6P0C0A3 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Chmp6P0C0A3 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Chmp6P0C0A3 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Chmp6P0C0A3 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC19.1■□□□□ 0.65
Chmp6P0C0A3 Gm5643-201ENSMUST00000117081 966 ntBASIC19.1■□□□□ 0.65
Chmp6P0C0A3 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC19.1■□□□□ 0.65
Chmp6P0C0A3 Stmn1-201ENSMUST00000030636 1060 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Chmp6P0C0A3 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Chmp6P0C0A3 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Chmp6P0C0A3 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Chmp6P0C0A3 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Chmp6P0C0A3 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC19.09■□□□□ 0.65
Chmp6P0C0A3 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Chmp6P0C0A3 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
Chmp6P0C0A3 Zfp219-204ENSMUST00000226522 2804 ntAPPRIS P2 BASIC19.09■□□□□ 0.65
Chmp6P0C0A3 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC19.09■□□□□ 0.65
Chmp6P0C0A3 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC19.09■□□□□ 0.65
Chmp6P0C0A3 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC19.09■□□□□ 0.65
Chmp6P0C0A3 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC19.09■□□□□ 0.65
Chmp6P0C0A3 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Chmp6P0C0A3 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC19.09■□□□□ 0.65
Chmp6P0C0A3 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC19.09■□□□□ 0.65
Chmp6P0C0A3 Wt1-205ENSMUST00000143043 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Chmp6P0C0A3 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Chmp6P0C0A3 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Chmp6P0C0A3 Hapln2-201ENSMUST00000005014 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Chmp6P0C0A3 Pex14-201ENSMUST00000103217 2006 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Chmp6P0C0A3 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Chmp6P0C0A3 Itpkb-201ENSMUST00000070181 6235 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Chmp6P0C0A3 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Chmp6P0C0A3 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
Chmp6P0C0A3 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Chmp6P0C0A3 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Chmp6P0C0A3 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC19.08■□□□□ 0.64
Chmp6P0C0A3 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Chmp6P0C0A3 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC19.08■□□□□ 0.64
Chmp6P0C0A3 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Chmp6P0C0A3 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
Chmp6P0C0A3 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
Chmp6P0C0A3 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Chmp6P0C0A3 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Chmp6P0C0A3 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Chmp6P0C0A3 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Chmp6P0C0A3 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Chmp6P0C0A3 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Chmp6P0C0A3 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Chmp6P0C0A3 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Chmp6P0C0A3 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Chmp6P0C0A3 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Chmp6P0C0A3 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Chmp6P0C0A3 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Chmp6P0C0A3 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC19.07■□□□□ 0.64
Chmp6P0C0A3 Tpsb2-201ENSMUST00000069616 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Chmp6P0C0A3 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 16.5 ms