Protein–RNA interactions for Protein: P02463

Col4a1, Collagen alpha-1(IV) chain, mousemouse

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col4a1P02463 Mrpl37-201ENSMUST00000030365 1498 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Col4a1P02463 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Col4a1P02463 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC21.73■■□□□ 1.07
Col4a1P02463 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Col4a1P02463 Ppt2-205ENSMUST00000169067 1392 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
Col4a1P02463 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Col4a1P02463 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Col4a1P02463 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Col4a1P02463 Pdgfa-203ENSMUST00000110896 1363 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
Col4a1P02463 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Col4a1P02463 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC21.72■■□□□ 1.07
Col4a1P02463 1700024G13Rik-201ENSMUST00000100723 850 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Col4a1P02463 Mrps18c-203ENSMUST00000112901 820 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Col4a1P02463 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC21.72■■□□□ 1.07
Col4a1P02463 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Col4a1P02463 Gm26709-203ENSMUST00000223260 715 ntTSL 5 BASIC21.72■■□□□ 1.07
Col4a1P02463 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Col4a1P02463 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC21.72■■□□□ 1.07
Col4a1P02463 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Col4a1P02463 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Col4a1P02463 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Col4a1P02463 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Col4a1P02463 Sgta-201ENSMUST00000005067 1969 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Col4a1P02463 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Col4a1P02463 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Col4a1P02463 Rasl2-9-201ENSMUST00000147835 1013 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
Col4a1P02463 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
Col4a1P02463 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Col4a1P02463 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Col4a1P02463 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Col4a1P02463 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
Col4a1P02463 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Col4a1P02463 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Col4a1P02463 Ngrn-201ENSMUST00000117989 1317 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Col4a1P02463 Elac2-203ENSMUST00000108697 2612 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
Col4a1P02463 Nfkbib-201ENSMUST00000032815 2061 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Col4a1P02463 AC123834.2-201ENSMUST00000224038 2340 ntBASIC21.7■■□□□ 1.06
Col4a1P02463 Gm27389-201ENSMUST00000183622 195 ntBASIC21.7■■□□□ 1.06
Col4a1P02463 Gm37722-201ENSMUST00000193757 208 ntBASIC21.7■■□□□ 1.06
Col4a1P02463 Gm38973-201ENSMUST00000206810 878 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Col4a1P02463 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Col4a1P02463 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Col4a1P02463 Grk6-206ENSMUST00000224995 2971 ntBASIC21.7■■□□□ 1.06
Col4a1P02463 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
Col4a1P02463 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Col4a1P02463 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Col4a1P02463 Gpd1-203ENSMUST00000162194 1515 ntTSL 5 BASIC21.7■■□□□ 1.06
Col4a1P02463 Acot7-206ENSMUST00000167926 1505 ntAPPRIS P4 TSL 1 (best) BASIC21.7■■□□□ 1.06
Col4a1P02463 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
Col4a1P02463 Gm11950-201ENSMUST00000121615 838 ntBASIC21.69■■□□□ 1.06
Col4a1P02463 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC21.69■■□□□ 1.06
Col4a1P02463 Gm17807-201ENSMUST00000186869 298 ntBASIC21.69■■□□□ 1.06
Col4a1P02463 Prss40-201ENSMUST00000047840 1275 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Col4a1P02463 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
Col4a1P02463 Serinc2-201ENSMUST00000105996 1878 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
Col4a1P02463 Txnl4b-201ENSMUST00000034159 1890 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Col4a1P02463 Nfil3-201ENSMUST00000071065 2026 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Col4a1P02463 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
Col4a1P02463 4933427J07Rik-201ENSMUST00000156275 1533 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Col4a1P02463 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC21.69■■□□□ 1.06
Col4a1P02463 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Col4a1P02463 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC21.69■■□□□ 1.06
Col4a1P02463 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Col4a1P02463 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Col4a1P02463 Mir770-201ENSMUST00000103252 94 ntBASIC21.69■■□□□ 1.06
Col4a1P02463 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC21.69■■□□□ 1.06
Col4a1P02463 Rpl14-201ENSMUST00000165532 1009 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Col4a1P02463 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC21.69■■□□□ 1.06
Col4a1P02463 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Col4a1P02463 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
Col4a1P02463 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
Col4a1P02463 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Col4a1P02463 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Col4a1P02463 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC21.68■■□□□ 1.06
Col4a1P02463 Gm25016-201ENSMUST00000158399 131 ntBASIC21.68■■□□□ 1.06
Col4a1P02463 AC130713.1-201ENSMUST00000228853 1096 ntBASIC21.68■■□□□ 1.06
Col4a1P02463 C1qbp-201ENSMUST00000078528 1175 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Col4a1P02463 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Col4a1P02463 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Col4a1P02463 Gm19721-201ENSMUST00000195284 1764 ntBASIC21.67■■□□□ 1.06
Col4a1P02463 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC21.67■■□□□ 1.06
Col4a1P02463 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Col4a1P02463 Psmd8-203ENSMUST00000186182 1512 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Col4a1P02463 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
Col4a1P02463 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Col4a1P02463 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC21.66■■□□□ 1.06
Col4a1P02463 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC21.66■■□□□ 1.06
Col4a1P02463 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Col4a1P02463 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Col4a1P02463 Skp1a-203ENSMUST00000109072 1754 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
Col4a1P02463 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
Col4a1P02463 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Col4a1P02463 Nectin2-202ENSMUST00000108450 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
Col4a1P02463 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Col4a1P02463 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
Col4a1P02463 Tmsb10-202ENSMUST00000114049 690 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Col4a1P02463 Mras-203ENSMUST00000122384 1122 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Col4a1P02463 Gm15952-201ENSMUST00000122858 490 ntTSL 3 BASIC21.66■■□□□ 1.06
Col4a1P02463 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Col4a1P02463 1500009L16Rik-201ENSMUST00000150459 1194 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Retrieved 100 of 76,532 protein–RNA pairs in 27.2 ms