Protein–RNA interactions for Protein: O35627

Nr1i3, Nuclear receptor subfamily 1 group I member 3, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1i3O35627 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
Nr1i3O35627 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC18.92■□□□□ 0.62
Nr1i3O35627 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Nr1i3O35627 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC18.92■□□□□ 0.62
Nr1i3O35627 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Nr1i3O35627 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Nr1i3O35627 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
Nr1i3O35627 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Nr1i3O35627 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Nr1i3O35627 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Nr1i3O35627 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Nr1i3O35627 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Nr1i3O35627 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
Nr1i3O35627 Gm13401-201ENSMUST00000117074 291 ntBASIC18.91■□□□□ 0.62
Nr1i3O35627 Gm10138-203ENSMUST00000206952 366 ntBASIC18.91■□□□□ 0.62
Nr1i3O35627 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Nr1i3O35627 AC125311.2-201ENSMUST00000227477 1940 ntBASIC18.91■□□□□ 0.62
Nr1i3O35627 Fam129c-208ENSMUST00000143662 2267 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
Nr1i3O35627 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
Nr1i3O35627 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Nr1i3O35627 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Nr1i3O35627 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Nr1i3O35627 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Nr1i3O35627 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Nr1i3O35627 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Nr1i3O35627 Dip2c-203ENSMUST00000174552 8023 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Nr1i3O35627 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Nr1i3O35627 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Nr1i3O35627 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
Nr1i3O35627 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Nr1i3O35627 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Nr1i3O35627 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Nr1i3O35627 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Nr1i3O35627 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
Nr1i3O35627 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Nr1i3O35627 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Nr1i3O35627 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
Nr1i3O35627 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC18.9■□□□□ 0.62
Nr1i3O35627 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Nr1i3O35627 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC18.9■□□□□ 0.62
Nr1i3O35627 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC18.9■□□□□ 0.62
Nr1i3O35627 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC18.9■□□□□ 0.62
Nr1i3O35627 Mtag2-201ENSMUST00000058665 714 ntBASIC18.9■□□□□ 0.62
Nr1i3O35627 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
Nr1i3O35627 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC18.9■□□□□ 0.62
Nr1i3O35627 Cdc14b-201ENSMUST00000039318 5859 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
Nr1i3O35627 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC18.9■□□□□ 0.62
Nr1i3O35627 Txnl4b-201ENSMUST00000034159 1890 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Nr1i3O35627 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Nr1i3O35627 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Nr1i3O35627 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Nr1i3O35627 Zcchc4-203ENSMUST00000113904 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Nr1i3O35627 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
Nr1i3O35627 Slc35g2-201ENSMUST00000093792 1590 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.62
Nr1i3O35627 Senp3-202ENSMUST00000066760 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Nr1i3O35627 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Nr1i3O35627 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Nr1i3O35627 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Nr1i3O35627 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Nr1i3O35627 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
Nr1i3O35627 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC18.89■□□□□ 0.61
Nr1i3O35627 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
Nr1i3O35627 Tpsb2-201ENSMUST00000069616 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Nr1i3O35627 Chrac1-201ENSMUST00000089765 871 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Nr1i3O35627 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
Nr1i3O35627 Hmces-201ENSMUST00000032141 1464 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Nr1i3O35627 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Nr1i3O35627 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Nr1i3O35627 F12-201ENSMUST00000021948 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Nr1i3O35627 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
Nr1i3O35627 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Nr1i3O35627 Mpig6b-201ENSMUST00000097337 2252 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Nr1i3O35627 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Nr1i3O35627 P2rx5-201ENSMUST00000006104 2395 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Nr1i3O35627 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC18.88■□□□□ 0.61
Nr1i3O35627 Gm9780-201ENSMUST00000184272 350 ntTSL 2 BASIC18.88■□□□□ 0.61
Nr1i3O35627 Gm37179-201ENSMUST00000194862 823 ntBASIC18.88■□□□□ 0.61
Nr1i3O35627 Gm2559-201ENSMUST00000201323 363 ntBASIC18.88■□□□□ 0.61
Nr1i3O35627 Dcps-202ENSMUST00000119847 1445 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Nr1i3O35627 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Nr1i3O35627 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC18.88■□□□□ 0.61
Nr1i3O35627 Gm10654-201ENSMUST00000098653 1633 ntBASIC18.88■□□□□ 0.61
Nr1i3O35627 Smpdl3b-201ENSMUST00000030709 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Nr1i3O35627 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
Nr1i3O35627 Zhx1-202ENSMUST00000110168 5212 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
Nr1i3O35627 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
Nr1i3O35627 Gm8773-201ENSMUST00000101627 1268 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Nr1i3O35627 AW011738-201ENSMUST00000105140 1848 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
Nr1i3O35627 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Nr1i3O35627 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC18.87■□□□□ 0.61
Nr1i3O35627 Gm44672-201ENSMUST00000206944 1098 ntBASIC18.87■□□□□ 0.61
Nr1i3O35627 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC18.87■□□□□ 0.61
Nr1i3O35627 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Nr1i3O35627 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Nr1i3O35627 Gm4968-201ENSMUST00000071458 858 ntBASIC18.87■□□□□ 0.61
Nr1i3O35627 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
Nr1i3O35627 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Nr1i3O35627 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Nr1i3O35627 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Nr1i3O35627 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 24.6 ms