Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Vps50-202ENSMUST00000164052 4824 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
Ddx56Q9D0R4 Vps13d-201ENSMUST00000020441 15665 ntAPPRIS ALT2 TSL 5 BASIC5.84□□□□□ -1.47
Ddx56Q9D0R4 Mtm1-213ENSMUST00000171933 3488 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
Ddx56Q9D0R4 Zfp26-203ENSMUST00000159569 11276 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
Ddx56Q9D0R4 Setd2-201ENSMUST00000153838 8350 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.48
Ddx56Q9D0R4 Gm4064-201ENSMUST00000187482 1561 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.48
Ddx56Q9D0R4 Depdc1a-203ENSMUST00000120272 3323 ntTSL 1 (best) BASIC5.84□□□□□ -1.48
Ddx56Q9D0R4 Nsun6-201ENSMUST00000028034 2897 ntAPPRIS P3 TSL 1 (best) BASIC5.84□□□□□ -1.48
Ddx56Q9D0R4 Olfr479-203ENSMUST00000214599 3248 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.48
Ddx56Q9D0R4 Ermn-201ENSMUST00000090940 3635 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.48
Ddx56Q9D0R4 Zfp317-202ENSMUST00000208694 3988 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
Ddx56Q9D0R4 AC116797.1-201ENSMUST00000223988 3955 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
Ddx56Q9D0R4 Phf11d-201ENSMUST00000095157 2666 ntAPPRIS P2 TSL 1 (best) BASIC5.83□□□□□ -1.48
Ddx56Q9D0R4 Olfr461-202ENSMUST00000215009 4292 ntAPPRIS P1 TSL 5 BASIC5.83□□□□□ -1.48
Ddx56Q9D0R4 Gm13023-201ENSMUST00000085144 1810 ntAPPRIS P3 TSL 1 (best) BASIC5.83□□□□□ -1.48
Ddx56Q9D0R4 Ceacam15-201ENSMUST00000108498 1391 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
Ddx56Q9D0R4 Gm37051-201ENSMUST00000194535 2943 ntBASIC5.83□□□□□ -1.48
Ddx56Q9D0R4 Gm43065-201ENSMUST00000198971 2092 ntBASIC5.83□□□□□ -1.48
Ddx56Q9D0R4 Akap11-201ENSMUST00000022593 5688 ntAPPRIS ALT2 TSL 5 BASIC5.83□□□□□ -1.48
Ddx56Q9D0R4 Gm12636-201ENSMUST00000117395 624 ntBASIC5.83□□□□□ -1.48
Ddx56Q9D0R4 Gm15951-201ENSMUST00000118377 400 ntBASIC5.83□□□□□ -1.48
Ddx56Q9D0R4 Gm14933-201ENSMUST00000118840 481 ntBASIC5.83□□□□□ -1.48
Ddx56Q9D0R4 Gm14472-201ENSMUST00000119815 282 ntBASIC5.83□□□□□ -1.48
Ddx56Q9D0R4 Gm13815-201ENSMUST00000119963 412 ntBASIC5.83□□□□□ -1.48
Ddx56Q9D0R4 Gm11389-201ENSMUST00000121407 430 ntBASIC5.83□□□□□ -1.48
Ddx56Q9D0R4 Gm13838-201ENSMUST00000132130 531 ntTSL 5 BASIC5.83□□□□□ -1.48
Ddx56Q9D0R4 Gm15600-201ENSMUST00000153522 856 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
Ddx56Q9D0R4 Gm24241-201ENSMUST00000157787 145 ntBASIC5.83□□□□□ -1.48
Ddx56Q9D0R4 Gm3170-201ENSMUST00000168753 850 ntBASIC5.83□□□□□ -1.48
Ddx56Q9D0R4 Gm3348-201ENSMUST00000177813 850 ntBASIC5.83□□□□□ -1.48
Ddx56Q9D0R4 Rpl23a-ps12-201ENSMUST00000179178 468 ntBASIC5.83□□□□□ -1.48
Ddx56Q9D0R4 Gm26665-201ENSMUST00000181378 839 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
Ddx56Q9D0R4 Rian-211ENSMUST00000182737 699 ntTSL 3 BASIC5.83□□□□□ -1.48
Ddx56Q9D0R4 Gm27855-201ENSMUST00000184122 128 ntBASIC5.83□□□□□ -1.48
Ddx56Q9D0R4 A730094K22Rik-201ENSMUST00000193867 740 ntBASIC5.83□□□□□ -1.48
Ddx56Q9D0R4 Gm37308-201ENSMUST00000194684 100 ntBASIC5.83□□□□□ -1.48
Ddx56Q9D0R4 Igkv13-61-1-201ENSMUST00000198255 296 ntBASIC5.83□□□□□ -1.48
Ddx56Q9D0R4 Gm44006-201ENSMUST00000204273 396 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
Ddx56Q9D0R4 Gm44002-201ENSMUST00000205134 594 ntBASIC5.83□□□□□ -1.48
Ddx56Q9D0R4 Gm19174-201ENSMUST00000216944 956 ntBASIC5.83□□□□□ -1.48
Ddx56Q9D0R4 AC110381.1-201ENSMUST00000218987 586 ntBASIC5.83□□□□□ -1.48
Ddx56Q9D0R4 AC168274.2-201ENSMUST00000219252 338 ntTSL 5 BASIC5.83□□□□□ -1.48
Ddx56Q9D0R4 Gm25131-201ENSMUST00000082653 151 ntBASIC5.83□□□□□ -1.48
Ddx56Q9D0R4 Mir298-201ENSMUST00000083476 82 ntBASIC5.83□□□□□ -1.48
Ddx56Q9D0R4 Vmn1r27-201ENSMUST00000095862 912 ntAPPRIS P2 BASIC5.83□□□□□ -1.48
Ddx56Q9D0R4 Vmn2r125-201ENSMUST00000096794 1110 ntAPPRIS P1 TSL 5 BASIC5.83□□□□□ -1.48
Ddx56Q9D0R4 Gm9700-201ENSMUST00000193786 1617 ntBASIC5.83□□□□□ -1.48
Ddx56Q9D0R4 Olfr741-202ENSMUST00000205518 3406 ntAPPRIS P1 TSL 2 BASIC5.83□□□□□ -1.48
Ddx56Q9D0R4 Gm37485-201ENSMUST00000192326 2953 ntBASIC5.83□□□□□ -1.48
Ddx56Q9D0R4 Gm6503-201ENSMUST00000210829 2225 ntBASIC5.83□□□□□ -1.48
Ddx56Q9D0R4 Ktn1-203ENSMUST00000185940 3869 ntAPPRIS ALT2 TSL 5 BASIC5.83□□□□□ -1.48
Ddx56Q9D0R4 Ktn1-208ENSMUST00000187039 3875 ntAPPRIS ALT2 TSL 5 BASIC5.83□□□□□ -1.48
Ddx56Q9D0R4 9230019H11Rik-201ENSMUST00000095874 2801 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
Ddx56Q9D0R4 Dpp10-202ENSMUST00000112606 15297 ntAPPRIS P2 TSL 1 (best) BASIC5.83□□□□□ -1.48
Ddx56Q9D0R4 Gm14139-202ENSMUST00000109929 1485 ntTSL 5 BASIC5.83□□□□□ -1.48
Ddx56Q9D0R4 Gm44000-201ENSMUST00000205038 1478 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
Ddx56Q9D0R4 Rfx6-201ENSMUST00000050455 3088 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
Ddx56Q9D0R4 Dtna-206ENSMUST00000221880 4490 ntAPPRIS ALT2 TSL 2 BASIC5.82□□□□□ -1.48
Ddx56Q9D0R4 Foxr2-201ENSMUST00000096265 3210 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
Ddx56Q9D0R4 Hspd1-ps1-201ENSMUST00000203513 1670 ntBASIC5.82□□□□□ -1.48
Ddx56Q9D0R4 AC117769.3-201ENSMUST00000225814 1664 ntBASIC5.82□□□□□ -1.48
Ddx56Q9D0R4 Parp4-201ENSMUST00000161553 6387 ntAPPRIS P1 TSL 5 BASIC5.82□□□□□ -1.48
Ddx56Q9D0R4 Pum2-201ENSMUST00000020915 3587 ntAPPRIS ALT2 TSL 1 (best) BASIC5.82□□□□□ -1.48
Ddx56Q9D0R4 Igkv10-96-201ENSMUST00000103328 359 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
Ddx56Q9D0R4 Olfr612-201ENSMUST00000104879 972 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
Ddx56Q9D0R4 Rnf148-201ENSMUST00000104979 1239 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
Ddx56Q9D0R4 Gm14795-201ENSMUST00000118461 471 ntBASIC5.82□□□□□ -1.48
Ddx56Q9D0R4 Atp5l2-ps-201ENSMUST00000120130 312 ntBASIC5.82□□□□□ -1.48
Ddx56Q9D0R4 Gm15959-201ENSMUST00000121724 368 ntBASIC5.82□□□□□ -1.48
Ddx56Q9D0R4 Gm4912-201ENSMUST00000122212 1044 ntBASIC5.82□□□□□ -1.48
Ddx56Q9D0R4 Gm16126-201ENSMUST00000126025 589 ntTSL 3 BASIC5.82□□□□□ -1.48
Ddx56Q9D0R4 Uty-204ENSMUST00000139365 4684 ntAPPRIS ALT2 TSL 1 (best) BASIC5.82□□□□□ -1.48
Ddx56Q9D0R4 Gm26372-201ENSMUST00000157831 236 ntBASIC5.82□□□□□ -1.48
Ddx56Q9D0R4 Gm23662-201ENSMUST00000158046 111 ntBASIC5.82□□□□□ -1.48
Ddx56Q9D0R4 Rab11a-206ENSMUST00000169058 462 ntTSL 5 BASIC5.82□□□□□ -1.48
Ddx56Q9D0R4 Gm23806-201ENSMUST00000175157 109 ntBASIC5.82□□□□□ -1.48
Ddx56Q9D0R4 Gm10251-201ENSMUST00000178788 384 ntAPPRIS P1 TSL 5 BASIC5.82□□□□□ -1.48
Ddx56Q9D0R4 Rps12-ps24-201ENSMUST00000182321 381 ntBASIC5.82□□□□□ -1.48
Ddx56Q9D0R4 Gm28228-201ENSMUST00000186880 632 ntTSL 5 BASIC5.82□□□□□ -1.48
Ddx56Q9D0R4 Gm37004-201ENSMUST00000193021 683 ntTSL 5 BASIC5.82□□□□□ -1.48
Ddx56Q9D0R4 1700052H01Rik-202ENSMUST00000196973 429 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
Ddx56Q9D0R4 Gm30928-202ENSMUST00000206881 271 ntTSL 3 BASIC5.82□□□□□ -1.48
Ddx56Q9D0R4 Gm44724-203ENSMUST00000208430 998 ntTSL 5 BASIC5.82□□□□□ -1.48
Ddx56Q9D0R4 Gm2516-201ENSMUST00000210011 954 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
Ddx56Q9D0R4 Gm7706-202ENSMUST00000211278 590 ntTSL 3 BASIC5.82□□□□□ -1.48
Ddx56Q9D0R4 AC153568.1-201ENSMUST00000218165 341 ntTSL 2 BASIC5.82□□□□□ -1.48
Ddx56Q9D0R4 Gm4510-201ENSMUST00000218265 427 ntBASIC5.82□□□□□ -1.48
Ddx56Q9D0R4 AC140381.1-201ENSMUST00000219168 367 ntTSL 2 BASIC5.82□□□□□ -1.48
Ddx56Q9D0R4 1700048P04Rik-201ENSMUST00000219825 369 ntTSL 3 BASIC5.82□□□□□ -1.48
Ddx56Q9D0R4 AC124569.1-201ENSMUST00000225932 101 ntBASIC5.82□□□□□ -1.48
Ddx56Q9D0R4 E330017A01Rik-201ENSMUST00000053249 1108 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
Ddx56Q9D0R4 Olfr714-201ENSMUST00000054629 954 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
Ddx56Q9D0R4 Wfdc15a-201ENSMUST00000063251 488 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
Ddx56Q9D0R4 Olfr427-201ENSMUST00000080831 948 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
Ddx56Q9D0R4 Gm25133-201ENSMUST00000082647 130 ntBASIC5.82□□□□□ -1.48
Ddx56Q9D0R4 Gm23448-201ENSMUST00000083151 104 ntBASIC5.82□□□□□ -1.48
Ddx56Q9D0R4 Gm22864-201ENSMUST00000083950 130 ntBASIC5.82□□□□□ -1.48
Ddx56Q9D0R4 Gm10221-201ENSMUST00000088299 309 ntBASIC5.82□□□□□ -1.48
Ddx56Q9D0R4 CT009696.4-201ENSMUST00000213487 1801 ntTSL 5 BASIC5.82□□□□□ -1.48
Ddx56Q9D0R4 Il12rb2-202ENSMUST00000117441 2600 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
Retrieved 100 of 76,532 protein–RNA pairs in 57.2 ms