Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Trim12c-201ENSMUST00000059037 3740 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
Upf3bQ3ULL6 Lin28b-201ENSMUST00000079390 5402 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
Upf3bQ3ULL6 AC126439.1-201ENSMUST00000226772 2104 ntBASIC5.03□□□□□ -1.6
Upf3bQ3ULL6 Gm36931-201ENSMUST00000192997 4801 ntBASIC5.03□□□□□ -1.6
Upf3bQ3ULL6 Gm44668-201ENSMUST00000207911 3265 ntBASIC5.03□□□□□ -1.6
Upf3bQ3ULL6 Olfr535-207ENSMUST00000217235 5186 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.6
Upf3bQ3ULL6 Zfp426-201ENSMUST00000080386 2417 ntAPPRIS P3 TSL 1 (best) BASIC5.03□□□□□ -1.6
Upf3bQ3ULL6 Ptgs2-201ENSMUST00000035065 4453 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
Upf3bQ3ULL6 Gm3675-201ENSMUST00000175904 1653 ntBASIC5.03□□□□□ -1.6
Upf3bQ3ULL6 Gm28832-201ENSMUST00000188603 1498 ntTSL 5 BASIC5.03□□□□□ -1.6
Upf3bQ3ULL6 Xirp2-202ENSMUST00000112347 11979 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
Upf3bQ3ULL6 Gm43831-201ENSMUST00000200461 2598 ntBASIC5.03□□□□□ -1.6
Upf3bQ3ULL6 Gm15288-201ENSMUST00000126640 653 ntTSL 3 BASIC5.03□□□□□ -1.6
Upf3bQ3ULL6 Gm14135-201ENSMUST00000135438 591 ntTSL 3 BASIC5.03□□□□□ -1.6
Upf3bQ3ULL6 Gm7437-201ENSMUST00000156744 661 ntTSL 2 BASIC5.03□□□□□ -1.6
Upf3bQ3ULL6 Gm22116-201ENSMUST00000158791 141 ntBASIC5.03□□□□□ -1.6
Upf3bQ3ULL6 Gm26871-204ENSMUST00000181310 523 ntTSL 3 BASIC5.03□□□□□ -1.6
Upf3bQ3ULL6 Gm8502-201ENSMUST00000185708 901 ntBASIC5.03□□□□□ -1.6
Upf3bQ3ULL6 Gm21147-201ENSMUST00000186046 913 ntBASIC5.03□□□□□ -1.6
Upf3bQ3ULL6 Gm21617-201ENSMUST00000188297 691 ntBASIC5.03□□□□□ -1.6
Upf3bQ3ULL6 Gm37908-201ENSMUST00000195828 470 ntBASIC5.03□□□□□ -1.6
Upf3bQ3ULL6 Gm20997-201ENSMUST00000205148 231 ntBASIC5.03□□□□□ -1.6
Upf3bQ3ULL6 Gm44237-201ENSMUST00000205183 936 ntBASIC5.03□□□□□ -1.6
Upf3bQ3ULL6 Gm39090-202ENSMUST00000205992 508 ntTSL 5 BASIC5.03□□□□□ -1.6
Upf3bQ3ULL6 Gm45157-201ENSMUST00000208729 401 ntBASIC5.03□□□□□ -1.6
Upf3bQ3ULL6 Olfr540-ps1-201ENSMUST00000210499 612 ntBASIC5.03□□□□□ -1.6
Upf3bQ3ULL6 Rpl29-ps2-202ENSMUST00000220540 1165 ntTSL 5 BASIC5.03□□□□□ -1.6
Upf3bQ3ULL6 Rpl29-ps2-203ENSMUST00000222043 1036 ntTSL 5 BASIC5.03□□□□□ -1.6
Upf3bQ3ULL6 Gm5457-201ENSMUST00000022260 333 ntBASIC5.03□□□□□ -1.6
Upf3bQ3ULL6 AC124549.1-201ENSMUST00000225912 333 ntBASIC5.03□□□□□ -1.6
Upf3bQ3ULL6 Gm6776-201ENSMUST00000057752 900 ntBASIC5.03□□□□□ -1.6
Upf3bQ3ULL6 n-R5s152-201ENSMUST00000093641 119 ntBASIC5.03□□□□□ -1.6
Upf3bQ3ULL6 Gm20449-201ENSMUST00000094532 3847 ntAPPRIS P1 TSL 2 BASIC5.03□□□□□ -1.6
Upf3bQ3ULL6 Zfp935-201ENSMUST00000076195 1631 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
Upf3bQ3ULL6 Fpgt-201ENSMUST00000066568 3518 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
Upf3bQ3ULL6 Olfr1331-203ENSMUST00000216589 3139 ntAPPRIS ALT2 TSL 5 BASIC5.02□□□□□ -1.61
Upf3bQ3ULL6 Ktn1-215ENSMUST00000189101 3761 ntAPPRIS ALT2 TSL 5 BASIC5.02□□□□□ -1.61
Upf3bQ3ULL6 Cnot2-213ENSMUST00000169921 2120 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
Upf3bQ3ULL6 Btbd35f15-201ENSMUST00000186329 1917 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
Upf3bQ3ULL6 Olfr1085-203ENSMUST00000214566 5129 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
Upf3bQ3ULL6 Mir676-201ENSMUST00000102443 89 ntBASIC5.02□□□□□ -1.61
Upf3bQ3ULL6 Olfr359-ps1-201ENSMUST00000115977 926 ntBASIC5.02□□□□□ -1.61
Upf3bQ3ULL6 Gm12231-201ENSMUST00000119447 695 ntBASIC5.02□□□□□ -1.61
Upf3bQ3ULL6 Gm15905-201ENSMUST00000137042 298 ntBASIC5.02□□□□□ -1.61
Upf3bQ3ULL6 Gm3362-201ENSMUST00000148102 466 ntBASIC5.02□□□□□ -1.61
Upf3bQ3ULL6 Gm25923-201ENSMUST00000158312 138 ntBASIC5.02□□□□□ -1.61
Upf3bQ3ULL6 Gm8374-201ENSMUST00000163826 672 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
Upf3bQ3ULL6 Gm20428-201ENSMUST00000174365 283 ntBASIC5.02□□□□□ -1.61
Upf3bQ3ULL6 Gm16434-202ENSMUST00000177712 618 ntAPPRIS ALT2 TSL 5 BASIC5.02□□□□□ -1.61
Upf3bQ3ULL6 Gm3453-202ENSMUST00000178308 618 ntAPPRIS ALT2 TSL 5 BASIC5.02□□□□□ -1.61
Upf3bQ3ULL6 Gm6676-202ENSMUST00000178376 618 ntAPPRIS ALT2 TSL 5 BASIC5.02□□□□□ -1.61
Upf3bQ3ULL6 Gm3127-203ENSMUST00000178386 618 ntAPPRIS ALT2 TSL 5 BASIC5.02□□□□□ -1.61
Upf3bQ3ULL6 Gm3187-201ENSMUST00000178429 618 ntAPPRIS ALT2 TSL 5 BASIC5.02□□□□□ -1.61
Upf3bQ3ULL6 Gm3685-202ENSMUST00000179199 618 ntAPPRIS ALT2 TSL 5 BASIC5.02□□□□□ -1.61
Upf3bQ3ULL6 Trav12-2-201ENSMUST00000180972 426 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
Upf3bQ3ULL6 Snhg14-201ENSMUST00000185272 726 ntTSL 5 BASIC5.02□□□□□ -1.61
Upf3bQ3ULL6 Gm9687-201ENSMUST00000189312 602 ntBASIC5.02□□□□□ -1.61
Upf3bQ3ULL6 AC136146.1-201ENSMUST00000196180 91 ntBASIC5.02□□□□□ -1.61
Upf3bQ3ULL6 Gm43144-201ENSMUST00000198256 485 ntBASIC5.02□□□□□ -1.61
Upf3bQ3ULL6 Gm42502-201ENSMUST00000198550 1089 ntBASIC5.02□□□□□ -1.61
Upf3bQ3ULL6 Gm44485-201ENSMUST00000199569 137 ntBASIC5.02□□□□□ -1.61
Upf3bQ3ULL6 Gm8264-201ENSMUST00000217801 465 ntBASIC5.02□□□□□ -1.61
Upf3bQ3ULL6 Gm8158-201ENSMUST00000219220 465 ntBASIC5.02□□□□□ -1.61
Upf3bQ3ULL6 Gm8112-201ENSMUST00000219637 465 ntBASIC5.02□□□□□ -1.61
Upf3bQ3ULL6 CT954323.2-201ENSMUST00000222056 213 ntBASIC5.02□□□□□ -1.61
Upf3bQ3ULL6 AC162183.1-202ENSMUST00000225434 904 ntBASIC5.02□□□□□ -1.61
Upf3bQ3ULL6 AC098742.1-201ENSMUST00000227945 373 ntBASIC5.02□□□□□ -1.61
Upf3bQ3ULL6 Olfr16-201ENSMUST00000038432 1050 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
Upf3bQ3ULL6 Olfr1168-201ENSMUST00000079599 939 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
Upf3bQ3ULL6 Gm29536-201ENSMUST00000189296 3283 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
Upf3bQ3ULL6 Trpc5os-201ENSMUST00000155206 3585 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
Upf3bQ3ULL6 Gm26814-201ENSMUST00000181178 4149 ntBASIC5.02□□□□□ -1.61
Upf3bQ3ULL6 Gm28964-202ENSMUST00000186771 1502 ntTSL 5 BASIC5.02□□□□□ -1.61
Upf3bQ3ULL6 Gm29301-202ENSMUST00000189344 1502 ntTSL 5 BASIC5.02□□□□□ -1.61
Upf3bQ3ULL6 Gm19176-201ENSMUST00000222149 1831 ntBASIC5.02□□□□□ -1.61
Upf3bQ3ULL6 Phf11d-201ENSMUST00000095157 2666 ntAPPRIS P2 TSL 1 (best) BASIC5.01□□□□□ -1.61
Upf3bQ3ULL6 Gm5925-201ENSMUST00000105016 1497 ntBASIC5.01□□□□□ -1.61
Upf3bQ3ULL6 Cdh12-203ENSMUST00000227496 6004 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
Upf3bQ3ULL6 Gm37470-201ENSMUST00000193378 2798 ntBASIC5.01□□□□□ -1.61
Upf3bQ3ULL6 Rgs17-202ENSMUST00000064225 8191 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
Upf3bQ3ULL6 Cep290-201ENSMUST00000164751 8006 ntAPPRIS P1 TSL 5 BASIC5.01□□□□□ -1.61
Upf3bQ3ULL6 Olfr266-202ENSMUST00000213616 2195 ntAPPRIS P1 TSL 5 BASIC5.01□□□□□ -1.61
Upf3bQ3ULL6 Olfr365-202ENSMUST00000213969 5333 ntAPPRIS P1 TSL 5 BASIC5.01□□□□□ -1.61
Upf3bQ3ULL6 Olfr1016-203ENSMUST00000217410 2738 ntAPPRIS P1 TSL 3 BASIC5.01□□□□□ -1.61
Upf3bQ3ULL6 H2al1n-201ENSMUST00000105137 514 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
Upf3bQ3ULL6 Rpl23a-ps14-201ENSMUST00000118777 424 ntBASIC5.01□□□□□ -1.61
Upf3bQ3ULL6 Itpa-ps3-201ENSMUST00000119034 395 ntBASIC5.01□□□□□ -1.61
Upf3bQ3ULL6 Gm12186-201ENSMUST00000119050 945 ntBASIC5.01□□□□□ -1.61
Upf3bQ3ULL6 Gm11366-201ENSMUST00000119279 429 ntBASIC5.01□□□□□ -1.61
Upf3bQ3ULL6 Gm12249-201ENSMUST00000132323 719 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
Upf3bQ3ULL6 Gm23513-201ENSMUST00000158181 133 ntBASIC5.01□□□□□ -1.61
Upf3bQ3ULL6 4430402I18Rik-203ENSMUST00000160542 1057 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
Upf3bQ3ULL6 5430401F13Rik-202ENSMUST00000161385 608 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
Upf3bQ3ULL6 Gm8356-202ENSMUST00000164917 984 ntAPPRIS ALT2 TSL 5 BASIC5.01□□□□□ -1.61
Upf3bQ3ULL6 Vmn1r175-201ENSMUST00000166141 915 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
Upf3bQ3ULL6 Gm28703-201ENSMUST00000185312 1159 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
Upf3bQ3ULL6 Gm3145-201ENSMUST00000188584 220 ntBASIC5.01□□□□□ -1.61
Upf3bQ3ULL6 Gm43151-201ENSMUST00000201093 657 ntTSL 3 BASIC5.01□□□□□ -1.61
Upf3bQ3ULL6 Gm9560-201ENSMUST00000205012 1201 ntBASIC5.01□□□□□ -1.61
Upf3bQ3ULL6 Gm45096-201ENSMUST00000205833 427 ntTSL 3 BASIC5.01□□□□□ -1.61
Retrieved 100 of 76,532 protein–RNA pairs in 96.1 ms