Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Prpf40aQ9R1C7 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Prpf40aQ9R1C7 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Prpf40aQ9R1C7 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Prpf40aQ9R1C7 Gm12669-201ENSMUST00000122162 1009 ntBASIC19.4■□□□□ 0.7
Prpf40aQ9R1C7 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Prpf40aQ9R1C7 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC19.4■□□□□ 0.7
Prpf40aQ9R1C7 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Prpf40aQ9R1C7 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Prpf40aQ9R1C7 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Prpf40aQ9R1C7 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Prpf40aQ9R1C7 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Prpf40aQ9R1C7 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Prpf40aQ9R1C7 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Prpf40aQ9R1C7 Rasgrp1-201ENSMUST00000102534 5229 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
Prpf40aQ9R1C7 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Prpf40aQ9R1C7 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Prpf40aQ9R1C7 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Prpf40aQ9R1C7 Hebp1-201ENSMUST00000045855 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Prpf40aQ9R1C7 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Prpf40aQ9R1C7 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Prpf40aQ9R1C7 Zcchc6-207ENSMUST00000225576 2499 ntBASIC19.39■□□□□ 0.69
Prpf40aQ9R1C7 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Prpf40aQ9R1C7 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Prpf40aQ9R1C7 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC19.38■□□□□ 0.69
Prpf40aQ9R1C7 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC19.38■□□□□ 0.69
Prpf40aQ9R1C7 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Prpf40aQ9R1C7 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Prpf40aQ9R1C7 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC19.38■□□□□ 0.69
Prpf40aQ9R1C7 Fcho2-208ENSMUST00000224992 2964 ntBASIC19.38■□□□□ 0.69
Prpf40aQ9R1C7 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
Prpf40aQ9R1C7 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Prpf40aQ9R1C7 Tbc1d9b-202ENSMUST00000101270 5213 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
Prpf40aQ9R1C7 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Prpf40aQ9R1C7 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC19.37■□□□□ 0.69
Prpf40aQ9R1C7 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Prpf40aQ9R1C7 Fuz-201ENSMUST00000071207 1698 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Prpf40aQ9R1C7 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Prpf40aQ9R1C7 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC19.37■□□□□ 0.69
Prpf40aQ9R1C7 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Prpf40aQ9R1C7 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Prpf40aQ9R1C7 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Prpf40aQ9R1C7 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC19.37■□□□□ 0.69
Prpf40aQ9R1C7 Gm37856-201ENSMUST00000191634 999 ntBASIC19.37■□□□□ 0.69
Prpf40aQ9R1C7 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Prpf40aQ9R1C7 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC19.37■□□□□ 0.69
Prpf40aQ9R1C7 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Prpf40aQ9R1C7 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Prpf40aQ9R1C7 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Prpf40aQ9R1C7 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Prpf40aQ9R1C7 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Prpf40aQ9R1C7 Senp2-201ENSMUST00000023561 4499 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Prpf40aQ9R1C7 Cyth2-201ENSMUST00000056820 2527 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Prpf40aQ9R1C7 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Prpf40aQ9R1C7 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Prpf40aQ9R1C7 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Prpf40aQ9R1C7 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Prpf40aQ9R1C7 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Prpf40aQ9R1C7 Gm11249-201ENSMUST00000117071 859 ntBASIC19.36■□□□□ 0.69
Prpf40aQ9R1C7 Trmt13-210ENSMUST00000198454 880 ntBASIC19.36■□□□□ 0.69
Prpf40aQ9R1C7 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Prpf40aQ9R1C7 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC19.36■□□□□ 0.69
Prpf40aQ9R1C7 Sirt7-201ENSMUST00000080202 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Prpf40aQ9R1C7 Gm19439-201ENSMUST00000198195 2273 ntBASIC19.36■□□□□ 0.69
Prpf40aQ9R1C7 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC19.36■□□□□ 0.69
Prpf40aQ9R1C7 Prss12-201ENSMUST00000029603 2602 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Prpf40aQ9R1C7 Iqgap2-201ENSMUST00000068603 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Prpf40aQ9R1C7 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Prpf40aQ9R1C7 Fam109a-201ENSMUST00000056654 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Prpf40aQ9R1C7 Ing1-207ENSMUST00000211007 2241 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Prpf40aQ9R1C7 Ube2z-201ENSMUST00000100528 3997 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Prpf40aQ9R1C7 Hmga1-202ENSMUST00000117254 1328 ntAPPRIS P3 TSL 2 BASIC19.35■□□□□ 0.69
Prpf40aQ9R1C7 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Prpf40aQ9R1C7 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Prpf40aQ9R1C7 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Prpf40aQ9R1C7 Ikzf5-203ENSMUST00000128432 714 ntTSL 3 BASIC19.35■□□□□ 0.69
Prpf40aQ9R1C7 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Prpf40aQ9R1C7 Gm20760-201ENSMUST00000179197 648 ntBASIC19.35■□□□□ 0.69
Prpf40aQ9R1C7 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Prpf40aQ9R1C7 Spcs1-207ENSMUST00000228767 1008 ntBASIC19.35■□□□□ 0.69
Prpf40aQ9R1C7 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Prpf40aQ9R1C7 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC19.35■□□□□ 0.69
Prpf40aQ9R1C7 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Prpf40aQ9R1C7 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
Prpf40aQ9R1C7 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Prpf40aQ9R1C7 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
Prpf40aQ9R1C7 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC19.34■□□□□ 0.69
Prpf40aQ9R1C7 Atp5d-203ENSMUST00000105367 1410 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
Prpf40aQ9R1C7 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
Prpf40aQ9R1C7 Jmy-201ENSMUST00000065537 8776 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Prpf40aQ9R1C7 Nectin2-202ENSMUST00000108450 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Prpf40aQ9R1C7 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Prpf40aQ9R1C7 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Prpf40aQ9R1C7 Gm27275-201ENSMUST00000184318 272 ntBASIC19.34■□□□□ 0.69
Prpf40aQ9R1C7 AC135637.1-201ENSMUST00000227750 365 ntBASIC19.34■□□□□ 0.69
Prpf40aQ9R1C7 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC19.34■□□□□ 0.69
Prpf40aQ9R1C7 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Prpf40aQ9R1C7 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Prpf40aQ9R1C7 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
Prpf40aQ9R1C7 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC19.33■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 23.3 ms