Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Scn11aQ9R053 Ppil3-202ENSMUST00000114345 1175 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Scn11aQ9R053 Asnsd1-202ENSMUST00000123519 983 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Scn11aQ9R053 Mir1668-201ENSMUST00000184114 107 ntBASIC21.02■□□□□ 0.96
Scn11aQ9R053 Gm32031-203ENSMUST00000208993 649 ntTSL 2 BASIC21.02■□□□□ 0.96
Scn11aQ9R053 D230030E09Rik-201ENSMUST00000222459 884 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Scn11aQ9R053 Mrps6-201ENSMUST00000047429 846 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Scn11aQ9R053 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Scn11aQ9R053 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Scn11aQ9R053 Nectin2-202ENSMUST00000108450 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Scn11aQ9R053 Spint2-202ENSMUST00000108236 1211 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Scn11aQ9R053 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Scn11aQ9R053 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Scn11aQ9R053 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
Scn11aQ9R053 Gm19721-201ENSMUST00000195284 1764 ntBASIC21.01■□□□□ 0.95
Scn11aQ9R053 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC21■□□□□ 0.95
Scn11aQ9R053 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
Scn11aQ9R053 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
Scn11aQ9R053 Gm15952-201ENSMUST00000122858 490 ntTSL 3 BASIC21■□□□□ 0.95
Scn11aQ9R053 Psmd13-209ENSMUST00000164681 726 ntTSL 5 BASIC21■□□□□ 0.95
Scn11aQ9R053 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
Scn11aQ9R053 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Scn11aQ9R053 Rplp2-201ENSMUST00000084434 964 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Scn11aQ9R053 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC21■□□□□ 0.95
Scn11aQ9R053 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC21■□□□□ 0.95
Scn11aQ9R053 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC21■□□□□ 0.95
Scn11aQ9R053 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
Scn11aQ9R053 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC21■□□□□ 0.95
Scn11aQ9R053 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC21■□□□□ 0.95
Scn11aQ9R053 Nnat-202ENSMUST00000109526 1213 ntAPPRIS P4 TSL 1 (best) BASIC21■□□□□ 0.95
Scn11aQ9R053 Gm38282-201ENSMUST00000192751 695 ntTSL 5 BASIC21■□□□□ 0.95
Scn11aQ9R053 Gm19554-201ENSMUST00000220934 2076 ntTSL 1 (best) BASIC21■□□□□ 0.95
Scn11aQ9R053 Ndufv3-201ENSMUST00000046288 1537 ntAPPRIS P4 TSL 1 (best) BASIC21■□□□□ 0.95
Scn11aQ9R053 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Scn11aQ9R053 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Scn11aQ9R053 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC20.99■□□□□ 0.95
Scn11aQ9R053 Nat8f3-202ENSMUST00000168531 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Scn11aQ9R053 Insig2-201ENSMUST00000003818 2697 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Scn11aQ9R053 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Scn11aQ9R053 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC20.99■□□□□ 0.95
Scn11aQ9R053 Rpl39l-201ENSMUST00000044103 805 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Scn11aQ9R053 Mtnr1b-201ENSMUST00000057920 1095 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Scn11aQ9R053 Dnajb9-201ENSMUST00000015049 2461 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Scn11aQ9R053 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC20.99■□□□□ 0.95
Scn11aQ9R053 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Scn11aQ9R053 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Scn11aQ9R053 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Scn11aQ9R053 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Scn11aQ9R053 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Scn11aQ9R053 Arpc4-204ENSMUST00000204802 794 ntTSL 3 BASIC20.98■□□□□ 0.95
Scn11aQ9R053 Tbpl1-201ENSMUST00000095794 1195 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Scn11aQ9R053 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Scn11aQ9R053 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
Scn11aQ9R053 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Scn11aQ9R053 Gm38973-201ENSMUST00000206810 878 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Scn11aQ9R053 Spsb2-202ENSMUST00000052727 1219 ntAPPRIS P1 TSL 3 BASIC20.97■□□□□ 0.95
Scn11aQ9R053 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Scn11aQ9R053 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Scn11aQ9R053 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Scn11aQ9R053 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Scn11aQ9R053 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC20.97■□□□□ 0.95
Scn11aQ9R053 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Scn11aQ9R053 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Scn11aQ9R053 Fdps-203ENSMUST00000196709 1382 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
Scn11aQ9R053 Sap18-203ENSMUST00000111269 459 ntTSL 2 BASIC20.97■□□□□ 0.95
Scn11aQ9R053 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC20.97■□□□□ 0.95
Scn11aQ9R053 Fam92a-201ENSMUST00000087052 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Scn11aQ9R053 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Scn11aQ9R053 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Scn11aQ9R053 Prpsap1-201ENSMUST00000106391 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Scn11aQ9R053 Rpl19-ps10-201ENSMUST00000205555 330 ntBASIC20.96■□□□□ 0.95
Scn11aQ9R053 Gm45631-201ENSMUST00000210318 1244 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Scn11aQ9R053 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Scn11aQ9R053 Mrpl43-201ENSMUST00000097715 1213 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Scn11aQ9R053 2810408A11Rik-203ENSMUST00000102580 1640 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
Scn11aQ9R053 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC20.96■□□□□ 0.95
Scn11aQ9R053 Nfil3-201ENSMUST00000071065 2026 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Scn11aQ9R053 Gm43272-201ENSMUST00000200599 1584 ntBASIC20.96■□□□□ 0.95
Scn11aQ9R053 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Scn11aQ9R053 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Scn11aQ9R053 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC20.95■□□□□ 0.95
Scn11aQ9R053 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Scn11aQ9R053 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Scn11aQ9R053 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC20.95■□□□□ 0.94
Scn11aQ9R053 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Scn11aQ9R053 Iqck-206ENSMUST00000208658 2891 ntBASIC20.95■□□□□ 0.94
Scn11aQ9R053 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Scn11aQ9R053 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC20.95■□□□□ 0.94
Scn11aQ9R053 Spsb2-203ENSMUST00000112473 1322 ntBASIC20.95■□□□□ 0.94
Scn11aQ9R053 Krt15-201ENSMUST00000107411 1700 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Scn11aQ9R053 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Scn11aQ9R053 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Scn11aQ9R053 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Scn11aQ9R053 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Scn11aQ9R053 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Scn11aQ9R053 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Scn11aQ9R053 Olfr279-201ENSMUST00000050451 933 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
Scn11aQ9R053 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC20.95■□□□□ 0.94
Scn11aQ9R053 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Scn11aQ9R053 Tm9sf2-203ENSMUST00000171318 1494 ntTSL 5 BASIC20.94■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 12.8 ms