Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Lima1Q9ERG0 Dvl2-201ENSMUST00000019362 2968 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Lima1Q9ERG0 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Lima1Q9ERG0 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Lima1Q9ERG0 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Lima1Q9ERG0 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Lima1Q9ERG0 Dok7-202ENSMUST00000101298 2443 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Lima1Q9ERG0 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Lima1Q9ERG0 Atp1b1-201ENSMUST00000027863 2580 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Lima1Q9ERG0 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Lima1Q9ERG0 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Lima1Q9ERG0 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
Lima1Q9ERG0 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Lima1Q9ERG0 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
Lima1Q9ERG0 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
Lima1Q9ERG0 Zfp764-201ENSMUST00000059199 2508 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Lima1Q9ERG0 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Lima1Q9ERG0 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC17.44■□□□□ 0.38
Lima1Q9ERG0 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Lima1Q9ERG0 Gm16432-201ENSMUST00000094273 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Lima1Q9ERG0 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Lima1Q9ERG0 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC17.44■□□□□ 0.38
Lima1Q9ERG0 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC17.44■□□□□ 0.38
Lima1Q9ERG0 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Lima1Q9ERG0 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Lima1Q9ERG0 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Lima1Q9ERG0 Sart3-201ENSMUST00000019118 4447 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Lima1Q9ERG0 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Lima1Q9ERG0 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Lima1Q9ERG0 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
Lima1Q9ERG0 Adam15-203ENSMUST00000107446 1686 ntTSL 5 BASIC17.43■□□□□ 0.38
Lima1Q9ERG0 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
Lima1Q9ERG0 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Lima1Q9ERG0 Gm26571-201ENSMUST00000181399 666 ntBASIC17.43■□□□□ 0.38
Lima1Q9ERG0 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC17.43■□□□□ 0.38
Lima1Q9ERG0 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Lima1Q9ERG0 Igsf11-201ENSMUST00000023478 3443 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Lima1Q9ERG0 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Lima1Q9ERG0 Plekhh3-201ENSMUST00000043397 3056 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
Lima1Q9ERG0 Gnb2-204ENSMUST00000111027 1610 ntTSL 5 BASIC17.43■□□□□ 0.38
Lima1Q9ERG0 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Lima1Q9ERG0 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Lima1Q9ERG0 Smurf2-201ENSMUST00000092517 3125 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Lima1Q9ERG0 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Lima1Q9ERG0 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Lima1Q9ERG0 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Lima1Q9ERG0 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
Lima1Q9ERG0 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Lima1Q9ERG0 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
Lima1Q9ERG0 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Lima1Q9ERG0 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Lima1Q9ERG0 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Lima1Q9ERG0 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
Lima1Q9ERG0 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Lima1Q9ERG0 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Lima1Q9ERG0 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Lima1Q9ERG0 Cxcl14-202ENSMUST00000224801 1467 ntBASIC17.42■□□□□ 0.38
Lima1Q9ERG0 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Lima1Q9ERG0 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
Lima1Q9ERG0 Dusp4-201ENSMUST00000033930 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Lima1Q9ERG0 Iqsec2-202ENSMUST00000112604 5967 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Lima1Q9ERG0 Rassf1-201ENSMUST00000010211 1727 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Lima1Q9ERG0 Slc35e3-201ENSMUST00000079041 3489 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Lima1Q9ERG0 Plppr2-203ENSMUST00000190387 2608 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Lima1Q9ERG0 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
Lima1Q9ERG0 Nespas-201ENSMUST00000143738 1083 ntBASIC17.41■□□□□ 0.38
Lima1Q9ERG0 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC17.41■□□□□ 0.38
Lima1Q9ERG0 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Lima1Q9ERG0 Marveld1-201ENSMUST00000061111 3066 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Lima1Q9ERG0 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC17.4■□□□□ 0.38
Lima1Q9ERG0 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Lima1Q9ERG0 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Lima1Q9ERG0 Shroom3-211ENSMUST00000225438 5742 ntBASIC17.4■□□□□ 0.38
Lima1Q9ERG0 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Lima1Q9ERG0 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
Lima1Q9ERG0 Tasp1-201ENSMUST00000046656 2480 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Lima1Q9ERG0 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC17.4■□□□□ 0.38
Lima1Q9ERG0 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Lima1Q9ERG0 Tle2-213ENSMUST00000146358 2749 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
Lima1Q9ERG0 Gm15039-201ENSMUST00000118914 875 ntBASIC17.4■□□□□ 0.38
Lima1Q9ERG0 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
Lima1Q9ERG0 Plekhh3-206ENSMUST00000164474 3010 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Lima1Q9ERG0 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Lima1Q9ERG0 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.38
Lima1Q9ERG0 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Lima1Q9ERG0 Nfib-205ENSMUST00000107247 3267 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.38
Lima1Q9ERG0 Gpr20-201ENSMUST00000064166 2144 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Lima1Q9ERG0 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Lima1Q9ERG0 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Lima1Q9ERG0 Mfsd10-202ENSMUST00000114329 1906 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Lima1Q9ERG0 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Lima1Q9ERG0 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
Lima1Q9ERG0 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Lima1Q9ERG0 Gnao1-207ENSMUST00000138659 5526 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Lima1Q9ERG0 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Lima1Q9ERG0 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Lima1Q9ERG0 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
Lima1Q9ERG0 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC17.39■□□□□ 0.37
Lima1Q9ERG0 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC17.39■□□□□ 0.37
Lima1Q9ERG0 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 37.3 ms