Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Mob2-201ENSMUST00000084418 1490 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Cdc40Q9DC48 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
Cdc40Q9DC48 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Cdc40Q9DC48 Gm29241-201ENSMUST00000189260 1096 ntBASIC16.38■□□□□ 0.21
Cdc40Q9DC48 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Cdc40Q9DC48 Rassf1-201ENSMUST00000010211 1727 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Cdc40Q9DC48 Gm38345-201ENSMUST00000192635 1748 ntBASIC16.38■□□□□ 0.21
Cdc40Q9DC48 Gm5464-201ENSMUST00000100453 2156 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
Cdc40Q9DC48 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Cdc40Q9DC48 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
Cdc40Q9DC48 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Cdc40Q9DC48 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC16.38■□□□□ 0.21
Cdc40Q9DC48 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Cdc40Q9DC48 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC16.38■□□□□ 0.21
Cdc40Q9DC48 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Cdc40Q9DC48 Naxd-201ENSMUST00000033901 1359 ntTSL 2 BASIC16.38■□□□□ 0.21
Cdc40Q9DC48 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Cdc40Q9DC48 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Cdc40Q9DC48 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Cdc40Q9DC48 Sept9-201ENSMUST00000019038 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Cdc40Q9DC48 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Cdc40Q9DC48 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
Cdc40Q9DC48 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
Cdc40Q9DC48 H2-K2-201ENSMUST00000174250 1049 ntBASIC16.37■□□□□ 0.21
Cdc40Q9DC48 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Cdc40Q9DC48 Gm10698-201ENSMUST00000182663 604 ntBASIC16.37■□□□□ 0.21
Cdc40Q9DC48 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC16.37■□□□□ 0.21
Cdc40Q9DC48 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC16.37■□□□□ 0.21
Cdc40Q9DC48 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Cdc40Q9DC48 Stac2-201ENSMUST00000017544 3050 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Cdc40Q9DC48 Adam22-205ENSMUST00000115385 2318 ntTSL 2 BASIC16.37■□□□□ 0.21
Cdc40Q9DC48 Pde3b-201ENSMUST00000032909 6573 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Cdc40Q9DC48 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Cdc40Q9DC48 Rasa2-201ENSMUST00000034984 5813 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Cdc40Q9DC48 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Cdc40Q9DC48 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Cdc40Q9DC48 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
Cdc40Q9DC48 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
Cdc40Q9DC48 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Cdc40Q9DC48 Nuak1-201ENSMUST00000020220 5558 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Cdc40Q9DC48 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC16.36■□□□□ 0.21
Cdc40Q9DC48 Prex1-201ENSMUST00000036719 6533 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Cdc40Q9DC48 Gm45141-201ENSMUST00000206502 1888 ntBASIC16.36■□□□□ 0.21
Cdc40Q9DC48 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC16.36■□□□□ 0.21
Cdc40Q9DC48 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Cdc40Q9DC48 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC16.36■□□□□ 0.21
Cdc40Q9DC48 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC16.36■□□□□ 0.21
Cdc40Q9DC48 Gm10830-201ENSMUST00000186379 636 ntTSL 5 BASIC16.36■□□□□ 0.21
Cdc40Q9DC48 AC163280.1-201ENSMUST00000228194 1100 ntBASIC16.36■□□□□ 0.21
Cdc40Q9DC48 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC16.36■□□□□ 0.21
Cdc40Q9DC48 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
Cdc40Q9DC48 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC16.36■□□□□ 0.21
Cdc40Q9DC48 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Cdc40Q9DC48 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Cdc40Q9DC48 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Cdc40Q9DC48 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Cdc40Q9DC48 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC16.35■□□□□ 0.21
Cdc40Q9DC48 Sh3rf3-205ENSMUST00000153031 5682 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Cdc40Q9DC48 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
Cdc40Q9DC48 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC16.35■□□□□ 0.21
Cdc40Q9DC48 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC16.35■□□□□ 0.21
Cdc40Q9DC48 AL672049.1-201ENSMUST00000197943 91 ntBASIC16.35■□□□□ 0.21
Cdc40Q9DC48 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
Cdc40Q9DC48 AC153881.1-201ENSMUST00000214448 284 ntBASIC16.35■□□□□ 0.21
Cdc40Q9DC48 AC158538.1-201ENSMUST00000225870 294 ntBASIC16.35■□□□□ 0.21
Cdc40Q9DC48 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Cdc40Q9DC48 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Cdc40Q9DC48 Ppp1r3f-205ENSMUST00000150787 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Cdc40Q9DC48 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Cdc40Q9DC48 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
Cdc40Q9DC48 Aqp2-201ENSMUST00000023752 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Cdc40Q9DC48 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Cdc40Q9DC48 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Cdc40Q9DC48 Stard3-201ENSMUST00000018311 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Cdc40Q9DC48 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Cdc40Q9DC48 Dnajb14-201ENSMUST00000090178 9477 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Cdc40Q9DC48 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC16.34■□□□□ 0.21
Cdc40Q9DC48 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Cdc40Q9DC48 Gm11927-201ENSMUST00000118472 759 ntBASIC16.34■□□□□ 0.21
Cdc40Q9DC48 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
Cdc40Q9DC48 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Cdc40Q9DC48 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Cdc40Q9DC48 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Cdc40Q9DC48 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Cdc40Q9DC48 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Cdc40Q9DC48 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Cdc40Q9DC48 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Cdc40Q9DC48 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Cdc40Q9DC48 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
Cdc40Q9DC48 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Cdc40Q9DC48 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
Cdc40Q9DC48 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Cdc40Q9DC48 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Cdc40Q9DC48 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
Cdc40Q9DC48 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Cdc40Q9DC48 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Cdc40Q9DC48 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
Cdc40Q9DC48 Gm1673-203ENSMUST00000114383 511 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Cdc40Q9DC48 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC16.33■□□□□ 0.2
Cdc40Q9DC48 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC16.33■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 45.2 ms