Protein–RNA interactions for Protein: Q9CR29

Ccdc43, Coiled-coil domain-containing protein 43, mousemouse

Known RBP Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc43Q9CR29 Cdv3-201ENSMUST00000035484 3387 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ccdc43Q9CR29 Gm26674-201ENSMUST00000180770 1446 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Ccdc43Q9CR29 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
Ccdc43Q9CR29 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC19.62■□□□□ 0.73
Ccdc43Q9CR29 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ccdc43Q9CR29 Gm13148-201ENSMUST00000118892 745 ntBASIC19.62■□□□□ 0.73
Ccdc43Q9CR29 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
Ccdc43Q9CR29 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC19.62■□□□□ 0.73
Ccdc43Q9CR29 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC19.62■□□□□ 0.73
Ccdc43Q9CR29 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC19.62■□□□□ 0.73
Ccdc43Q9CR29 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
Ccdc43Q9CR29 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ccdc43Q9CR29 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ccdc43Q9CR29 Bhlhe41-201ENSMUST00000032386 6133 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ccdc43Q9CR29 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ccdc43Q9CR29 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Ccdc43Q9CR29 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ccdc43Q9CR29 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ccdc43Q9CR29 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC19.61■□□□□ 0.73
Ccdc43Q9CR29 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ccdc43Q9CR29 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ccdc43Q9CR29 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ccdc43Q9CR29 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Ccdc43Q9CR29 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ccdc43Q9CR29 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
Ccdc43Q9CR29 Txndc5-201ENSMUST00000035988 2843 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ccdc43Q9CR29 Rhobtb2-201ENSMUST00000022665 5322 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ccdc43Q9CR29 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ccdc43Q9CR29 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ccdc43Q9CR29 Plcl1-201ENSMUST00000042986 6580 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ccdc43Q9CR29 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ccdc43Q9CR29 Rrbp1-201ENSMUST00000016072 5177 ntAPPRIS P4 TSL 5 BASIC19.6■□□□□ 0.73
Ccdc43Q9CR29 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ccdc43Q9CR29 Eda-203ENSMUST00000113776 5105 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Ccdc43Q9CR29 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC19.6■□□□□ 0.73
Ccdc43Q9CR29 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
Ccdc43Q9CR29 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ccdc43Q9CR29 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC19.6■□□□□ 0.73
Ccdc43Q9CR29 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC19.6■□□□□ 0.73
Ccdc43Q9CR29 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ccdc43Q9CR29 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ccdc43Q9CR29 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ccdc43Q9CR29 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ccdc43Q9CR29 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Ccdc43Q9CR29 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC19.6■□□□□ 0.73
Ccdc43Q9CR29 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Ccdc43Q9CR29 Rassf1-201ENSMUST00000010211 1727 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Ccdc43Q9CR29 Etnk1-204ENSMUST00000205256 2647 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Ccdc43Q9CR29 Tmem8-201ENSMUST00000025010 3464 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ccdc43Q9CR29 Zfp219-204ENSMUST00000226522 2804 ntAPPRIS P2 BASIC19.59■□□□□ 0.73
Ccdc43Q9CR29 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
Ccdc43Q9CR29 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ccdc43Q9CR29 Gm26524-201ENSMUST00000192339 390 ntBASIC19.59■□□□□ 0.73
Ccdc43Q9CR29 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC19.59■□□□□ 0.73
Ccdc43Q9CR29 Slc35b2-207ENSMUST00000226086 850 ntBASIC19.59■□□□□ 0.73
Ccdc43Q9CR29 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC19.59■□□□□ 0.73
Ccdc43Q9CR29 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
Ccdc43Q9CR29 Egln2-202ENSMUST00000108382 1756 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
Ccdc43Q9CR29 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ccdc43Q9CR29 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ccdc43Q9CR29 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ccdc43Q9CR29 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ccdc43Q9CR29 Ubr2-202ENSMUST00000113337 7633 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ccdc43Q9CR29 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ccdc43Q9CR29 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Ccdc43Q9CR29 Gm43702-201ENSMUST00000198772 2546 ntBASIC19.58■□□□□ 0.73
Ccdc43Q9CR29 Slc5a10-201ENSMUST00000051552 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Ccdc43Q9CR29 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Ccdc43Q9CR29 Pgm2l1-202ENSMUST00000084935 8834 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Ccdc43Q9CR29 Pde5a-204ENSMUST00000200389 7603 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
Ccdc43Q9CR29 Gm2399-201ENSMUST00000104944 225 ntBASIC19.58■□□□□ 0.72
Ccdc43Q9CR29 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Ccdc43Q9CR29 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Ccdc43Q9CR29 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC19.58■□□□□ 0.72
Ccdc43Q9CR29 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC19.58■□□□□ 0.72
Ccdc43Q9CR29 Rab3c-203ENSMUST00000224180 967 ntBASIC19.58■□□□□ 0.72
Ccdc43Q9CR29 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Ccdc43Q9CR29 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
Ccdc43Q9CR29 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Ccdc43Q9CR29 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC19.58■□□□□ 0.72
Ccdc43Q9CR29 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
Ccdc43Q9CR29 Gm16897-201ENSMUST00000180780 2492 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Ccdc43Q9CR29 Gm19439-201ENSMUST00000198195 2273 ntBASIC19.57■□□□□ 0.72
Ccdc43Q9CR29 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Ccdc43Q9CR29 Gm3807-201ENSMUST00000193520 1168 ntBASIC19.57■□□□□ 0.72
Ccdc43Q9CR29 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Ccdc43Q9CR29 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Ccdc43Q9CR29 Pou3f2-201ENSMUST00000178174 5587 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
Ccdc43Q9CR29 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Ccdc43Q9CR29 Ak5-201ENSMUST00000045262 3323 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Ccdc43Q9CR29 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
Ccdc43Q9CR29 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Ccdc43Q9CR29 9930021J03Rik-204ENSMUST00000177155 6632 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
Ccdc43Q9CR29 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
Ccdc43Q9CR29 Crk-203ENSMUST00000108425 4290 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Ccdc43Q9CR29 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Ccdc43Q9CR29 Tsnax-202ENSMUST00000212603 2169 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Ccdc43Q9CR29 Camsap2-203ENSMUST00000192314 4916 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Ccdc43Q9CR29 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
Ccdc43Q9CR29 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 30.3 ms