Protein–RNA interactions for Protein: Q99NB9

Sf3b1, Splicing factor 3B subunit 1, mousemouse

Known RBP Predictions only

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3b1Q99NB9 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Sf3b1Q99NB9 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC18.71■□□□□ 0.59
Sf3b1Q99NB9 Cnpy1-201ENSMUST00000117098 2661 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Sf3b1Q99NB9 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Sf3b1Q99NB9 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Sf3b1Q99NB9 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Sf3b1Q99NB9 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC18.71■□□□□ 0.59
Sf3b1Q99NB9 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC18.71■□□□□ 0.59
Sf3b1Q99NB9 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC18.71■□□□□ 0.59
Sf3b1Q99NB9 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Sf3b1Q99NB9 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
Sf3b1Q99NB9 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Sf3b1Q99NB9 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Sf3b1Q99NB9 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Sf3b1Q99NB9 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Sf3b1Q99NB9 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC18.7■□□□□ 0.58
Sf3b1Q99NB9 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Sf3b1Q99NB9 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Sf3b1Q99NB9 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
Sf3b1Q99NB9 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC18.7■□□□□ 0.58
Sf3b1Q99NB9 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Sf3b1Q99NB9 Gm38027-201ENSMUST00000192315 235 ntBASIC18.7■□□□□ 0.58
Sf3b1Q99NB9 Rps2-ps2-201ENSMUST00000194305 881 ntBASIC18.7■□□□□ 0.58
Sf3b1Q99NB9 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC18.7■□□□□ 0.58
Sf3b1Q99NB9 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
Sf3b1Q99NB9 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC18.7■□□□□ 0.58
Sf3b1Q99NB9 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Sf3b1Q99NB9 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Sf3b1Q99NB9 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Sf3b1Q99NB9 Grk6-206ENSMUST00000224995 2971 ntBASIC18.69■□□□□ 0.58
Sf3b1Q99NB9 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Sf3b1Q99NB9 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
Sf3b1Q99NB9 Nkd1-201ENSMUST00000034086 3035 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Sf3b1Q99NB9 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Sf3b1Q99NB9 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Sf3b1Q99NB9 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC18.69■□□□□ 0.58
Sf3b1Q99NB9 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Sf3b1Q99NB9 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Sf3b1Q99NB9 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Sf3b1Q99NB9 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC18.69■□□□□ 0.58
Sf3b1Q99NB9 Gm5953-201ENSMUST00000220644 2616 ntBASIC18.69■□□□□ 0.58
Sf3b1Q99NB9 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Sf3b1Q99NB9 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Sf3b1Q99NB9 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Sf3b1Q99NB9 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Sf3b1Q99NB9 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC18.68■□□□□ 0.58
Sf3b1Q99NB9 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Sf3b1Q99NB9 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Sf3b1Q99NB9 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Sf3b1Q99NB9 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Sf3b1Q99NB9 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
Sf3b1Q99NB9 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Sf3b1Q99NB9 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Sf3b1Q99NB9 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Sf3b1Q99NB9 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Sf3b1Q99NB9 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC18.68■□□□□ 0.58
Sf3b1Q99NB9 AC124601.2-201ENSMUST00000222888 759 ntTSL 2 BASIC18.68■□□□□ 0.58
Sf3b1Q99NB9 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Sf3b1Q99NB9 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Sf3b1Q99NB9 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Sf3b1Q99NB9 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Sf3b1Q99NB9 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Sf3b1Q99NB9 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
Sf3b1Q99NB9 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC18.67■□□□□ 0.58
Sf3b1Q99NB9 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
Sf3b1Q99NB9 Adat2-201ENSMUST00000019944 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Sf3b1Q99NB9 Casp6-201ENSMUST00000029626 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Sf3b1Q99NB9 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Sf3b1Q99NB9 Pigw-201ENSMUST00000067058 2675 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Sf3b1Q99NB9 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
Sf3b1Q99NB9 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC18.67■□□□□ 0.58
Sf3b1Q99NB9 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC18.67■□□□□ 0.58
Sf3b1Q99NB9 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC18.67■□□□□ 0.58
Sf3b1Q99NB9 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC18.67■□□□□ 0.58
Sf3b1Q99NB9 Gm28914-201ENSMUST00000188115 667 ntTSL 2 BASIC18.67■□□□□ 0.58
Sf3b1Q99NB9 Anapc13-203ENSMUST00000188398 727 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
Sf3b1Q99NB9 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC18.67■□□□□ 0.58
Sf3b1Q99NB9 Gm18959-201ENSMUST00000208954 655 ntBASIC18.67■□□□□ 0.58
Sf3b1Q99NB9 3110070M22Rik-201ENSMUST00000099148 1123 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
Sf3b1Q99NB9 Mettl4-ps1-202ENSMUST00000130218 1323 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Sf3b1Q99NB9 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Sf3b1Q99NB9 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Sf3b1Q99NB9 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Sf3b1Q99NB9 Dip2c-203ENSMUST00000174552 8023 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Sf3b1Q99NB9 Gm43182-201ENSMUST00000199476 2528 ntBASIC18.66■□□□□ 0.58
Sf3b1Q99NB9 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Sf3b1Q99NB9 Krt88-201ENSMUST00000023781 903 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Sf3b1Q99NB9 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Sf3b1Q99NB9 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Sf3b1Q99NB9 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
Sf3b1Q99NB9 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
Sf3b1Q99NB9 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Sf3b1Q99NB9 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Sf3b1Q99NB9 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Sf3b1Q99NB9 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC18.65■□□□□ 0.58
Sf3b1Q99NB9 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
Sf3b1Q99NB9 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC18.65■□□□□ 0.58
Sf3b1Q99NB9 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
Sf3b1Q99NB9 0610012G03Rik-201ENSMUST00000202722 1445 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
Sf3b1Q99NB9 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC18.65■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 18.6 ms