Protein–RNA interactions for Protein: Q99LC2

Cstf1, Cleavage stimulation factor subunit 1, mousemouse

Known RBP Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cstf1Q99LC2 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Cstf1Q99LC2 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Cstf1Q99LC2 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC17.58■□□□□ 0.4
Cstf1Q99LC2 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Cstf1Q99LC2 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Cstf1Q99LC2 Gm17112-201ENSMUST00000163194 432 ntTSL 3 BASIC17.58■□□□□ 0.4
Cstf1Q99LC2 Gm26827-201ENSMUST00000181911 148 ntTSL 5 BASIC17.58■□□□□ 0.4
Cstf1Q99LC2 Gm37805-201ENSMUST00000192612 1094 ntBASIC17.58■□□□□ 0.4
Cstf1Q99LC2 Cnih3-204ENSMUST00000209607 564 ntTSL 5 BASIC17.58■□□□□ 0.4
Cstf1Q99LC2 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Cstf1Q99LC2 C1qbp-201ENSMUST00000078528 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Cstf1Q99LC2 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
Cstf1Q99LC2 Car2-201ENSMUST00000029078 1788 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Cstf1Q99LC2 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Cstf1Q99LC2 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
Cstf1Q99LC2 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Cstf1Q99LC2 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Cstf1Q99LC2 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Cstf1Q99LC2 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Cstf1Q99LC2 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
Cstf1Q99LC2 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Cstf1Q99LC2 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Cstf1Q99LC2 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Cstf1Q99LC2 Sap18-202ENSMUST00000111268 662 ntTSL 2 BASIC17.57■□□□□ 0.4
Cstf1Q99LC2 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC17.57■□□□□ 0.4
Cstf1Q99LC2 Umpk-ps-201ENSMUST00000211897 827 ntBASIC17.57■□□□□ 0.4
Cstf1Q99LC2 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Cstf1Q99LC2 Gm18669-201ENSMUST00000216049 778 ntBASIC17.57■□□□□ 0.4
Cstf1Q99LC2 Cltb-201ENSMUST00000049575 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Cstf1Q99LC2 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Cstf1Q99LC2 Necab3-202ENSMUST00000109716 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Cstf1Q99LC2 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Cstf1Q99LC2 Aqp5-202ENSMUST00000169082 1551 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Cstf1Q99LC2 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
Cstf1Q99LC2 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cstf1Q99LC2 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC17.56■□□□□ 0.4
Cstf1Q99LC2 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Cstf1Q99LC2 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cstf1Q99LC2 Cdc34-202ENSMUST00000166603 1078 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cstf1Q99LC2 Gm29518-201ENSMUST00000190858 372 ntBASIC17.56■□□□□ 0.4
Cstf1Q99LC2 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cstf1Q99LC2 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cstf1Q99LC2 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
Cstf1Q99LC2 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cstf1Q99LC2 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cstf1Q99LC2 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cstf1Q99LC2 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cstf1Q99LC2 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Cstf1Q99LC2 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cstf1Q99LC2 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
Cstf1Q99LC2 Keap1-204ENSMUST00000193982 2163 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cstf1Q99LC2 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cstf1Q99LC2 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cstf1Q99LC2 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cstf1Q99LC2 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
Cstf1Q99LC2 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC17.55■□□□□ 0.4
Cstf1Q99LC2 Eva1c-201ENSMUST00000037539 1698 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cstf1Q99LC2 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cstf1Q99LC2 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cstf1Q99LC2 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cstf1Q99LC2 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Cstf1Q99LC2 Gm9013-201ENSMUST00000132939 882 ntBASIC17.55■□□□□ 0.4
Cstf1Q99LC2 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
Cstf1Q99LC2 Gm4974-201ENSMUST00000209974 875 ntBASIC17.55■□□□□ 0.4
Cstf1Q99LC2 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC17.55■□□□□ 0.4
Cstf1Q99LC2 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cstf1Q99LC2 Fam92a-201ENSMUST00000087052 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cstf1Q99LC2 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC17.55■□□□□ 0.4
Cstf1Q99LC2 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Cstf1Q99LC2 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cstf1Q99LC2 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cstf1Q99LC2 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cstf1Q99LC2 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC17.55■□□□□ 0.4
Cstf1Q99LC2 Renbp-202ENSMUST00000116578 1418 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cstf1Q99LC2 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cstf1Q99LC2 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
Cstf1Q99LC2 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
Cstf1Q99LC2 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Cstf1Q99LC2 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cstf1Q99LC2 Ccser1-203ENSMUST00000126214 5657 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Cstf1Q99LC2 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC17.54■□□□□ 0.4
Cstf1Q99LC2 Pdcd5-202ENSMUST00000120714 767 ntTSL 3 BASIC17.54■□□□□ 0.4
Cstf1Q99LC2 Srgn-205ENSMUST00000162161 694 ntAPPRIS P1 TSL 3 BASIC17.54■□□□□ 0.4
Cstf1Q99LC2 Sae1-203ENSMUST00000210999 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cstf1Q99LC2 Insl3-201ENSMUST00000034261 623 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cstf1Q99LC2 Gm11748-201ENSMUST00000153825 1498 ntTSL 2 BASIC17.54■□□□□ 0.4
Cstf1Q99LC2 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cstf1Q99LC2 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cstf1Q99LC2 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cstf1Q99LC2 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Cstf1Q99LC2 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
Cstf1Q99LC2 Tfdp2-209ENSMUST00000188750 1713 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Cstf1Q99LC2 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Cstf1Q99LC2 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC17.53■□□□□ 0.4
Cstf1Q99LC2 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Cstf1Q99LC2 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
Cstf1Q99LC2 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC17.53■□□□□ 0.4
Cstf1Q99LC2 Sap18-203ENSMUST00000111269 459 ntTSL 2 BASIC17.53■□□□□ 0.4
Cstf1Q99LC2 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC17.53■□□□□ 0.4
Cstf1Q99LC2 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC17.53■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 38.5 ms