Protein–RNA interactions for Protein: Q8R5L3

Vps39, Vam6/Vps39-like protein, mousemouse

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps39Q8R5L3 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Vps39Q8R5L3 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC17.68■□□□□ 0.42
Vps39Q8R5L3 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Vps39Q8R5L3 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Vps39Q8R5L3 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Vps39Q8R5L3 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Vps39Q8R5L3 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Vps39Q8R5L3 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
Vps39Q8R5L3 Wnt10b-205ENSMUST00000226846 1204 ntBASIC17.68■□□□□ 0.42
Vps39Q8R5L3 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Vps39Q8R5L3 Zfp783-201ENSMUST00000095946 670 ntBASIC17.68■□□□□ 0.42
Vps39Q8R5L3 Gm29514-202ENSMUST00000186665 2214 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Vps39Q8R5L3 Sarm1-202ENSMUST00000108287 4868 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Vps39Q8R5L3 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC17.68■□□□□ 0.42
Vps39Q8R5L3 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
Vps39Q8R5L3 Stox1-202ENSMUST00000133371 3510 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Vps39Q8R5L3 4930503L19Rik-201ENSMUST00000067556 2291 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Vps39Q8R5L3 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC17.67■□□□□ 0.42
Vps39Q8R5L3 Zbtb32-202ENSMUST00000108151 1775 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Vps39Q8R5L3 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
Vps39Q8R5L3 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC17.67■□□□□ 0.42
Vps39Q8R5L3 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
Vps39Q8R5L3 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC17.67■□□□□ 0.42
Vps39Q8R5L3 Gm26524-201ENSMUST00000192339 390 ntBASIC17.67■□□□□ 0.42
Vps39Q8R5L3 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Vps39Q8R5L3 Rab3c-203ENSMUST00000224180 967 ntBASIC17.67■□□□□ 0.42
Vps39Q8R5L3 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Vps39Q8R5L3 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Vps39Q8R5L3 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Vps39Q8R5L3 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC17.67■□□□□ 0.42
Vps39Q8R5L3 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Vps39Q8R5L3 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC17.67■□□□□ 0.42
Vps39Q8R5L3 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Vps39Q8R5L3 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Vps39Q8R5L3 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Vps39Q8R5L3 Rasal2-201ENSMUST00000078308 10047 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Vps39Q8R5L3 Tlk2-201ENSMUST00000015107 3212 ntAPPRIS P3 TSL 5 BASIC17.66■□□□□ 0.42
Vps39Q8R5L3 Cacna1c-216ENSMUST00000188522 7338 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Vps39Q8R5L3 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Vps39Q8R5L3 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Vps39Q8R5L3 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Vps39Q8R5L3 Gm13148-201ENSMUST00000118892 745 ntBASIC17.66■□□□□ 0.42
Vps39Q8R5L3 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC17.66■□□□□ 0.42
Vps39Q8R5L3 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Vps39Q8R5L3 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Vps39Q8R5L3 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Vps39Q8R5L3 Cacna1a-201ENSMUST00000121390 7926 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Vps39Q8R5L3 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Vps39Q8R5L3 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Vps39Q8R5L3 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Vps39Q8R5L3 Itpkb-201ENSMUST00000070181 6235 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Vps39Q8R5L3 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Vps39Q8R5L3 Prss12-201ENSMUST00000029603 2602 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Vps39Q8R5L3 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC17.66■□□□□ 0.42
Vps39Q8R5L3 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Vps39Q8R5L3 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Vps39Q8R5L3 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Vps39Q8R5L3 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Vps39Q8R5L3 Atp5d-203ENSMUST00000105367 1410 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Vps39Q8R5L3 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Vps39Q8R5L3 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Vps39Q8R5L3 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Vps39Q8R5L3 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Vps39Q8R5L3 9930012K11Rik-201ENSMUST00000058240 1986 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Vps39Q8R5L3 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Vps39Q8R5L3 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Vps39Q8R5L3 Lrp5-201ENSMUST00000025856 5161 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Vps39Q8R5L3 Stard3-201ENSMUST00000018311 2070 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Vps39Q8R5L3 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Vps39Q8R5L3 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.42
Vps39Q8R5L3 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC17.64■□□□□ 0.42
Vps39Q8R5L3 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
Vps39Q8R5L3 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC17.64■□□□□ 0.41
Vps39Q8R5L3 Gm10418-201ENSMUST00000100943 576 ntBASIC17.64■□□□□ 0.41
Vps39Q8R5L3 Gm12933-201ENSMUST00000120203 872 ntBASIC17.64■□□□□ 0.41
Vps39Q8R5L3 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Vps39Q8R5L3 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Vps39Q8R5L3 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Vps39Q8R5L3 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Vps39Q8R5L3 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Vps39Q8R5L3 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Vps39Q8R5L3 Camsap3-212ENSMUST00000208240 2572 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Vps39Q8R5L3 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Vps39Q8R5L3 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Vps39Q8R5L3 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Vps39Q8R5L3 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Vps39Q8R5L3 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Vps39Q8R5L3 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Vps39Q8R5L3 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Vps39Q8R5L3 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
Vps39Q8R5L3 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Vps39Q8R5L3 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Vps39Q8R5L3 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Vps39Q8R5L3 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Vps39Q8R5L3 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Vps39Q8R5L3 Gm16712-201ENSMUST00000181962 1960 ntTSL 2 BASIC17.63■□□□□ 0.41
Vps39Q8R5L3 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
Vps39Q8R5L3 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
Vps39Q8R5L3 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Vps39Q8R5L3 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 16.7 ms