Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Ushbp1Q8R370 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
Ushbp1Q8R370 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
Ushbp1Q8R370 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Ushbp1Q8R370 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Ushbp1Q8R370 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Ushbp1Q8R370 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Ushbp1Q8R370 Flg-201ENSMUST00000050758 1488 ntBASIC19.77■□□□□ 0.76
Ushbp1Q8R370 Fuz-201ENSMUST00000071207 1698 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Ushbp1Q8R370 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Ushbp1Q8R370 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
Ushbp1Q8R370 Atp5d-203ENSMUST00000105367 1410 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
Ushbp1Q8R370 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ushbp1Q8R370 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ushbp1Q8R370 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ushbp1Q8R370 Mtrf1l-201ENSMUST00000019908 2588 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ushbp1Q8R370 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ushbp1Q8R370 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ushbp1Q8R370 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Ushbp1Q8R370 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
Ushbp1Q8R370 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ushbp1Q8R370 Mir1199-201ENSMUST00000117015 119 ntBASIC19.76■□□□□ 0.75
Ushbp1Q8R370 Ikzf5-203ENSMUST00000128432 714 ntTSL 3 BASIC19.76■□□□□ 0.75
Ushbp1Q8R370 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ushbp1Q8R370 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ushbp1Q8R370 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ushbp1Q8R370 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ushbp1Q8R370 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ushbp1Q8R370 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ushbp1Q8R370 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ushbp1Q8R370 Mfsd13a-201ENSMUST00000086969 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ushbp1Q8R370 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ushbp1Q8R370 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC19.75■□□□□ 0.75
Ushbp1Q8R370 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC19.75■□□□□ 0.75
Ushbp1Q8R370 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ushbp1Q8R370 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Ushbp1Q8R370 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Ushbp1Q8R370 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ushbp1Q8R370 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
Ushbp1Q8R370 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC19.75■□□□□ 0.75
Ushbp1Q8R370 H2-K2-201ENSMUST00000174250 1049 ntBASIC19.75■□□□□ 0.75
Ushbp1Q8R370 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ushbp1Q8R370 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ushbp1Q8R370 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ushbp1Q8R370 Best2-203ENSMUST00000209421 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ushbp1Q8R370 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC19.75■□□□□ 0.75
Ushbp1Q8R370 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
Ushbp1Q8R370 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC19.74■□□□□ 0.75
Ushbp1Q8R370 Hapln2-201ENSMUST00000005014 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ushbp1Q8R370 CT010444.2-201ENSMUST00000217877 1629 ntBASIC19.74■□□□□ 0.75
Ushbp1Q8R370 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC19.74■□□□□ 0.75
Ushbp1Q8R370 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ushbp1Q8R370 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC19.74■□□□□ 0.75
Ushbp1Q8R370 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC19.74■□□□□ 0.75
Ushbp1Q8R370 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ushbp1Q8R370 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Ushbp1Q8R370 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ushbp1Q8R370 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Ushbp1Q8R370 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Ushbp1Q8R370 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Ushbp1Q8R370 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Ushbp1Q8R370 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC19.73■□□□□ 0.75
Ushbp1Q8R370 Fkbp5-201ENSMUST00000079413 3542 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Ushbp1Q8R370 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Ushbp1Q8R370 Gm11643-201ENSMUST00000119578 864 ntBASIC19.73■□□□□ 0.75
Ushbp1Q8R370 Gm15847-201ENSMUST00000121417 1065 ntBASIC19.73■□□□□ 0.75
Ushbp1Q8R370 Klf13-204ENSMUST00000185175 487 ntTSL 2 BASIC19.73■□□□□ 0.75
Ushbp1Q8R370 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC19.73■□□□□ 0.75
Ushbp1Q8R370 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC19.73■□□□□ 0.75
Ushbp1Q8R370 Gm9987-201ENSMUST00000069768 567 ntBASIC19.73■□□□□ 0.75
Ushbp1Q8R370 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
Ushbp1Q8R370 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Ushbp1Q8R370 Gm43702-201ENSMUST00000198772 2546 ntBASIC19.73■□□□□ 0.75
Ushbp1Q8R370 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
Ushbp1Q8R370 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Ushbp1Q8R370 Zdhhc6-201ENSMUST00000076891 2263 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Ushbp1Q8R370 Mob2-201ENSMUST00000084418 1490 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Ushbp1Q8R370 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
Ushbp1Q8R370 Cyth2-201ENSMUST00000056820 2527 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Ushbp1Q8R370 Fam98a-201ENSMUST00000112507 2817 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Ushbp1Q8R370 Diras1-201ENSMUST00000055125 2953 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Ushbp1Q8R370 Slc5a10-201ENSMUST00000051552 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Ushbp1Q8R370 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Ushbp1Q8R370 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC19.72■□□□□ 0.75
Ushbp1Q8R370 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
Ushbp1Q8R370 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Ushbp1Q8R370 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Ushbp1Q8R370 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
Ushbp1Q8R370 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Ushbp1Q8R370 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Ushbp1Q8R370 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Ushbp1Q8R370 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Ushbp1Q8R370 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC19.71■□□□□ 0.75
Ushbp1Q8R370 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Ushbp1Q8R370 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Ushbp1Q8R370 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Ushbp1Q8R370 Gm11927-201ENSMUST00000118472 759 ntBASIC19.71■□□□□ 0.75
Ushbp1Q8R370 Gm13158-201ENSMUST00000122007 736 ntBASIC19.71■□□□□ 0.75
Ushbp1Q8R370 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
Ushbp1Q8R370 AC153881.2-201ENSMUST00000214877 204 ntBASIC19.71■□□□□ 0.75
Retrieved 100 of 76,532 protein–RNA pairs in 11.7 ms