Protein–RNA interactions for Protein: Q8CEI3

Ccdc28a, Coiled-coil domain-containing 28A, mousemouse

Predictions only

Length 192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28aQ8CEI3 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Ccdc28aQ8CEI3 Prcc-201ENSMUST00000005015 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Ccdc28aQ8CEI3 Mapkapk3-201ENSMUST00000035194 2816 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Ccdc28aQ8CEI3 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC18.64■□□□□ 0.57
Ccdc28aQ8CEI3 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ccdc28aQ8CEI3 Dlgap1-206ENSMUST00000133717 2355 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
Ccdc28aQ8CEI3 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ccdc28aQ8CEI3 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Ccdc28aQ8CEI3 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ccdc28aQ8CEI3 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC18.63■□□□□ 0.57
Ccdc28aQ8CEI3 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ccdc28aQ8CEI3 Ptges2-201ENSMUST00000028162 4978 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ccdc28aQ8CEI3 9330160F10Rik-201ENSMUST00000101007 2766 ntBASIC18.63■□□□□ 0.57
Ccdc28aQ8CEI3 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC18.63■□□□□ 0.57
Ccdc28aQ8CEI3 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Ccdc28aQ8CEI3 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ccdc28aQ8CEI3 Homez-202ENSMUST00000142283 4713 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ccdc28aQ8CEI3 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ccdc28aQ8CEI3 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ccdc28aQ8CEI3 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Ccdc28aQ8CEI3 Plekha7-210ENSMUST00000182834 5257 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Ccdc28aQ8CEI3 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ccdc28aQ8CEI3 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ccdc28aQ8CEI3 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC18.63■□□□□ 0.57
Ccdc28aQ8CEI3 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ccdc28aQ8CEI3 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ccdc28aQ8CEI3 Ankrd63-201ENSMUST00000104937 4861 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
Ccdc28aQ8CEI3 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ccdc28aQ8CEI3 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ccdc28aQ8CEI3 Rcc1-201ENSMUST00000030726 2278 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Ccdc28aQ8CEI3 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ccdc28aQ8CEI3 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
Ccdc28aQ8CEI3 Stard6-203ENSMUST00000168249 1167 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ccdc28aQ8CEI3 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
Ccdc28aQ8CEI3 Wnt4-201ENSMUST00000045747 4194 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ccdc28aQ8CEI3 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ccdc28aQ8CEI3 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ccdc28aQ8CEI3 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ccdc28aQ8CEI3 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ccdc28aQ8CEI3 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC18.62■□□□□ 0.57
Ccdc28aQ8CEI3 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ccdc28aQ8CEI3 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
Ccdc28aQ8CEI3 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
Ccdc28aQ8CEI3 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ccdc28aQ8CEI3 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ccdc28aQ8CEI3 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Ccdc28aQ8CEI3 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
Ccdc28aQ8CEI3 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
Ccdc28aQ8CEI3 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ccdc28aQ8CEI3 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC18.61■□□□□ 0.57
Ccdc28aQ8CEI3 Fam171b-201ENSMUST00000051454 5614 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ccdc28aQ8CEI3 Myo5a-214ENSMUST00000155282 6372 ntAPPRIS P5 TSL 5 BASIC18.61■□□□□ 0.57
Ccdc28aQ8CEI3 Dnaaf5-203ENSMUST00000196441 2426 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Ccdc28aQ8CEI3 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ccdc28aQ8CEI3 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
Ccdc28aQ8CEI3 Atxn7l2-204ENSMUST00000119650 2274 ntTSL 5 BASIC18.61■□□□□ 0.57
Ccdc28aQ8CEI3 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ccdc28aQ8CEI3 Mfsd10-202ENSMUST00000114329 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ccdc28aQ8CEI3 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
Ccdc28aQ8CEI3 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ccdc28aQ8CEI3 Eva1a-201ENSMUST00000042974 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ccdc28aQ8CEI3 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ccdc28aQ8CEI3 Synpo-205ENSMUST00000130044 4970 ntAPPRIS P3 TSL 2 BASIC18.6■□□□□ 0.57
Ccdc28aQ8CEI3 Tm2d1-202ENSMUST00000102793 1027 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ccdc28aQ8CEI3 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Ccdc28aQ8CEI3 Gm10493-201ENSMUST00000097270 612 ntBASIC18.6■□□□□ 0.57
Ccdc28aQ8CEI3 Axin1-203ENSMUST00000163421 2890 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
Ccdc28aQ8CEI3 Tdh-201ENSMUST00000022522 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ccdc28aQ8CEI3 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
Ccdc28aQ8CEI3 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ccdc28aQ8CEI3 Elac2-203ENSMUST00000108697 2612 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
Ccdc28aQ8CEI3 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
Ccdc28aQ8CEI3 Prpsap1-201ENSMUST00000106391 1841 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ccdc28aQ8CEI3 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ccdc28aQ8CEI3 Camsap2-203ENSMUST00000192314 4916 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ccdc28aQ8CEI3 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ccdc28aQ8CEI3 Gm27027-201ENSMUST00000183110 547 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
Ccdc28aQ8CEI3 Cep68-204ENSMUST00000162811 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ccdc28aQ8CEI3 Cfap206-202ENSMUST00000108136 1688 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Ccdc28aQ8CEI3 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
Ccdc28aQ8CEI3 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC18.59■□□□□ 0.57
Ccdc28aQ8CEI3 2810459M11Rik-202ENSMUST00000165824 3331 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ccdc28aQ8CEI3 Npas3-201ENSMUST00000101432 5879 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ccdc28aQ8CEI3 Gm43548-201ENSMUST00000197139 2353 ntBASIC18.59■□□□□ 0.57
Ccdc28aQ8CEI3 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC18.58■□□□□ 0.57
Ccdc28aQ8CEI3 Rasal2-201ENSMUST00000078308 10047 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
Ccdc28aQ8CEI3 Zfp865-203ENSMUST00000085427 2751 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Ccdc28aQ8CEI3 AC099934.2-201ENSMUST00000196389 70 ntBASIC18.58■□□□□ 0.56
Ccdc28aQ8CEI3 AC156953.1-201ENSMUST00000196953 70 ntBASIC18.58■□□□□ 0.56
Ccdc28aQ8CEI3 AC157822.2-201ENSMUST00000200291 70 ntBASIC18.58■□□□□ 0.56
Ccdc28aQ8CEI3 Gm7514-201ENSMUST00000209475 934 ntBASIC18.58■□□□□ 0.56
Ccdc28aQ8CEI3 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC18.58■□□□□ 0.56
Ccdc28aQ8CEI3 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Ccdc28aQ8CEI3 BC051019-202ENSMUST00000106735 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Ccdc28aQ8CEI3 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
Ccdc28aQ8CEI3 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Ccdc28aQ8CEI3 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Ccdc28aQ8CEI3 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Ccdc28aQ8CEI3 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
Ccdc28aQ8CEI3 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 28.4 ms