Protein–RNA interactions for Protein: Q8CEG5

Ccdc28b, Coiled-coil domain-containing protein 28B, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28bQ8CEG5 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Ccdc28bQ8CEG5 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Ccdc28bQ8CEG5 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Ccdc28bQ8CEG5 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Ccdc28bQ8CEG5 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Ccdc28bQ8CEG5 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC17.45■□□□□ 0.38
Ccdc28bQ8CEG5 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Ccdc28bQ8CEG5 Plekhh3-206ENSMUST00000164474 3010 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Ccdc28bQ8CEG5 Gm20628-201ENSMUST00000177363 3215 ntBASIC17.44■□□□□ 0.38
Ccdc28bQ8CEG5 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Ccdc28bQ8CEG5 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC17.44■□□□□ 0.38
Ccdc28bQ8CEG5 Gm22325-201ENSMUST00000158904 308 ntBASIC17.44■□□□□ 0.38
Ccdc28bQ8CEG5 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Ccdc28bQ8CEG5 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC17.44■□□□□ 0.38
Ccdc28bQ8CEG5 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC17.44■□□□□ 0.38
Ccdc28bQ8CEG5 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC17.44■□□□□ 0.38
Ccdc28bQ8CEG5 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
Ccdc28bQ8CEG5 Spef1-201ENSMUST00000028801 2328 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Ccdc28bQ8CEG5 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Ccdc28bQ8CEG5 Nfe2l1-202ENSMUST00000107657 3869 ntAPPRIS P3 TSL 5 BASIC17.44■□□□□ 0.38
Ccdc28bQ8CEG5 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Ccdc28bQ8CEG5 Gm26646-201ENSMUST00000180715 1490 ntTSL 5 BASIC17.44■□□□□ 0.38
Ccdc28bQ8CEG5 Tmem145-202ENSMUST00000119703 1781 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
Ccdc28bQ8CEG5 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
Ccdc28bQ8CEG5 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Ccdc28bQ8CEG5 Fancg-201ENSMUST00000030165 2771 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Ccdc28bQ8CEG5 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
Ccdc28bQ8CEG5 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Ccdc28bQ8CEG5 Cdc34b-202ENSMUST00000188741 1252 ntBASIC17.43■□□□□ 0.38
Ccdc28bQ8CEG5 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC17.43■□□□□ 0.38
Ccdc28bQ8CEG5 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Ccdc28bQ8CEG5 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
Ccdc28bQ8CEG5 Pdk3-201ENSMUST00000045748 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Ccdc28bQ8CEG5 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
Ccdc28bQ8CEG5 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC17.43■□□□□ 0.38
Ccdc28bQ8CEG5 Nploc4-201ENSMUST00000044271 4121 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Ccdc28bQ8CEG5 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Ccdc28bQ8CEG5 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
Ccdc28bQ8CEG5 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Ccdc28bQ8CEG5 Prrt4-201ENSMUST00000159200 3411 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Ccdc28bQ8CEG5 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC17.42■□□□□ 0.38
Ccdc28bQ8CEG5 Gm6209-202ENSMUST00000194629 1506 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Ccdc28bQ8CEG5 Eif5a-202ENSMUST00000070996 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Ccdc28bQ8CEG5 Marveld1-201ENSMUST00000061111 3066 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Ccdc28bQ8CEG5 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC17.42■□□□□ 0.38
Ccdc28bQ8CEG5 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Ccdc28bQ8CEG5 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
Ccdc28bQ8CEG5 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Ccdc28bQ8CEG5 AC069562.2-201ENSMUST00000224644 2146 ntBASIC17.42■□□□□ 0.38
Ccdc28bQ8CEG5 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Ccdc28bQ8CEG5 Rftn1-201ENSMUST00000044503 4029 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Ccdc28bQ8CEG5 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Ccdc28bQ8CEG5 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Ccdc28bQ8CEG5 Atp6v0a1-203ENSMUST00000103110 2716 ntTSL 5 BASIC17.41■□□□□ 0.38
Ccdc28bQ8CEG5 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
Ccdc28bQ8CEG5 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Ccdc28bQ8CEG5 Nrg3-201ENSMUST00000166968 4011 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
Ccdc28bQ8CEG5 Prmt1-203ENSMUST00000207370 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Ccdc28bQ8CEG5 A130014A01Rik-201ENSMUST00000183021 2323 ntBASIC17.41■□□□□ 0.38
Ccdc28bQ8CEG5 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Ccdc28bQ8CEG5 Rarg-202ENSMUST00000063339 2718 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Ccdc28bQ8CEG5 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC17.41■□□□□ 0.38
Ccdc28bQ8CEG5 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
Ccdc28bQ8CEG5 Gm27454-201ENSMUST00000185090 204 ntBASIC17.41■□□□□ 0.38
Ccdc28bQ8CEG5 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Ccdc28bQ8CEG5 Whrn-207ENSMUST00000107393 4028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Ccdc28bQ8CEG5 Whrn-203ENSMUST00000084510 4049 ntAPPRIS P4 TSL 1 (best) BASIC17.41■□□□□ 0.38
Ccdc28bQ8CEG5 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC17.41■□□□□ 0.38
Ccdc28bQ8CEG5 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
Ccdc28bQ8CEG5 Dpys-201ENSMUST00000022915 2466 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Ccdc28bQ8CEG5 Iqsec2-202ENSMUST00000112604 5967 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Ccdc28bQ8CEG5 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Ccdc28bQ8CEG5 Gpr150-201ENSMUST00000056130 2146 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
Ccdc28bQ8CEG5 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC17.41■□□□□ 0.38
Ccdc28bQ8CEG5 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Ccdc28bQ8CEG5 Pnpt1-201ENSMUST00000020756 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Ccdc28bQ8CEG5 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Ccdc28bQ8CEG5 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC17.4■□□□□ 0.38
Ccdc28bQ8CEG5 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ccdc28bQ8CEG5 Gnao1-207ENSMUST00000138659 5526 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Ccdc28bQ8CEG5 Vegfa-201ENSMUST00000024747 2765 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Ccdc28bQ8CEG5 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
Ccdc28bQ8CEG5 Chst8-203ENSMUST00000154629 2079 ntTSL 5 BASIC17.4■□□□□ 0.38
Ccdc28bQ8CEG5 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ccdc28bQ8CEG5 Gldc-201ENSMUST00000025778 3754 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ccdc28bQ8CEG5 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Ccdc28bQ8CEG5 Gm43060-201ENSMUST00000200621 289 ntBASIC17.4■□□□□ 0.38
Ccdc28bQ8CEG5 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ccdc28bQ8CEG5 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ccdc28bQ8CEG5 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ccdc28bQ8CEG5 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ccdc28bQ8CEG5 Grb7-201ENSMUST00000019456 2397 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ccdc28bQ8CEG5 Dgkz-202ENSMUST00000099709 3512 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
Ccdc28bQ8CEG5 Mboat7-201ENSMUST00000038608 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ccdc28bQ8CEG5 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ccdc28bQ8CEG5 Camsap2-203ENSMUST00000192314 4916 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ccdc28bQ8CEG5 Ralb-201ENSMUST00000004565 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ccdc28bQ8CEG5 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ccdc28bQ8CEG5 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ccdc28bQ8CEG5 Sphk1-202ENSMUST00000063446 2527 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 84.6 ms